View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14037_low_24 (Length: 247)
Name: NF14037_low_24
Description: NF14037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14037_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 4282001 - 4281763
Alignment:
| Q |
1 |
ccctctattggagtgaaattcttaattgacaaacatagtgttctctggcagttatttgactatatgcatatacagatgctttcgtaatttattcatcgca |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4282001 |
ccctctattggagtgaaattcttaattgacaaacatagtgttctctggcatttatttgactatatgcatatacagatgctttcgtaatttattcatcgca |
4281902 |
T |
|
| Q |
101 |
tgcttgggttttttaattgcacatatatgtgtcataaagtttaagttacgctactggtttttaactcactcaactaaagcaagattattatttacgtgat |
200 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4281901 |
tgcttgggttttttaattgcac----atgtgtcataaagtttaagttacgctactagtttttaactcactcaactaaagcaagattattatttacgtgat |
4281806 |
T |
|
| Q |
201 |
atacaatgcccaatatttaatctactactagttttcatatctg |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4281805 |
atacaatgcccaatatttaatctactactagttttcatatctg |
4281763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 19807600 - 19807365
Alignment:
| Q |
1 |
ccctctattggagtgaaattcttaattgacaaacatagtgttctctggcagttatttgactatatgcatatacagatgctttcgtaatttattcatcgca |
100 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19807600 |
ccctctattggggtgaaattcttaattgataaacatagtgttctctggcatttatttgactatatgcatatacagatgctttcgtaatttattcatcgca |
19807501 |
T |
|
| Q |
101 |
tgcttgggttttttaattgcacatatatgtgtcataaagtttaagttacgctactggtttttaactcactcaactaaagcaagattattatttacgtgat |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
19807500 |
tgcttgggttttttaattgcac----atgtgtcataaagtttaagttacgctactagtttttaactcgctcaactaaagcaagattattatttacttgat |
19807405 |
T |
|
| Q |
201 |
atacaatgcccaatatttaatctactactagttttcatat |
240 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||| |
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| T |
19807404 |
atacaatgcccaatatttaatctaatactagttttcatat |
19807365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 12208268 - 12208164
Alignment:
| Q |
1 |
ccctctattggagtgaaattcttaattgacaaacatagtgttctctggcagttatttgactatatgcatatacagatgctttcgtaatttattcatcgca |
100 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
12208268 |
ccctctatttgagtaaaattcttaattgacaaacatagtgttctctggcatttatttgactatgtgcatatacagatgctttcgtaatttattcatcgca |
12208169 |
T |
|
| Q |
101 |
tgctt |
105 |
Q |
| |
|
||||| |
|
|
| T |
12208168 |
tgctt |
12208164 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 18974103 - 18974341
Alignment:
| Q |
1 |
ccctctattggagtgaaattcttaattgacaaacatagtgttctctggcagttatttgactatatgcatatacagatgctttcgtaatttattcatcgca |
100 |
Q |
| |
|
|||||| |||| ||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18974103 |
ccctcttttggggtggaattcttaattgataaacatagtgttctctggcatttatttgactatatgcatatacagatgctttcgtaatttattcatcgca |
18974202 |
T |
|
| Q |
101 |
tgcttgggttttttaattgcacatatatgtgtcataaagtttaagttacgctactggtttttaactcactcaactaaagcaagattattatttacgtgat |
200 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
18974203 |
tgcttgggttttttaattgcacat----gtgtcataaagtttaagttacgctactagtttttaactcgctcaactaaagcaagattattatttacgtgat |
18974298 |
T |
|
| Q |
201 |
atacaatgcccaatatttaatctactactagttttcatatctg |
243 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
18974299 |
atacaatgcccaatatttaatctaatactagttttcatatctg |
18974341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 31709864 - 31710098
Alignment:
| Q |
1 |
ccctctattggagtgaaattcttaattgacaaacatagtgttctctggcagttatttgactatatgcatatacagatgctttcgtaatttattcatcgca |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
31709864 |
ccctctattggagtaaaattcttaattgacaaacattgtgttctctggcatttatttgactatgtgcatatacagatgctttcgtaatttattcatcgca |
31709963 |
T |
|
| Q |
101 |
tgcttgggttttttaattgcacatatatgtgtcataaagtttaagttacgctactggtttttaactcactcaactaaagcaagattattatttacgtgat |
200 |
Q |
| |
|
||||||||||||| || ||||||| ||| ||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
31709964 |
tgcttgggttttt-aactgcacatgtat----cataa-gtttaagttacgctattagtttttaactcactcaactaaagcaagattattgtttacgtgat |
31710057 |
T |
|
| Q |
201 |
atacaatgcccaatatttaatctactactagttttcatatc |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31710058 |
atacaatgcccaatatttaatctactactagttttcatatc |
31710098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 68 - 243
Target Start/End: Original strand, 14674323 - 14674494
Alignment:
| Q |
68 |
atatacagatgctttcgtaatttattcatcgcatgcttgggttttttaattgcacatatatgtgtcataaagttt-aagttacgctactggtttttaact |
166 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||| || ||||||| ||||||| |||||| || |||| ||||| |||||||||| |
|
|
| T |
14674323 |
atatacagatgctttcgtaaattattcatcgcatgcttgggttttt-aactgcacat----gtgtcattaagttttaacttacactactagtttttaact |
14674417 |
T |
|
| Q |
167 |
cactcaactaaagcaagattattatttacgtgatatacaatgcccaatatttaatctactactagttttcatatctg |
243 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14674418 |
cactcaactaaagcgagattattgtttacgtgatacgtaatgcccaatatttaatctactactagttttcatatctg |
14674494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 14674212 - 14674272
Alignment:
| Q |
1 |
ccctctattggagtgaaattcttaattgacaaacatagtgttctctggcagttatttgact |
61 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
14674212 |
ccctctattggagtaaaattcttaattgacaaacatagtgttctctggcatttatttgact |
14674272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 5331771 - 5331533
Alignment:
| Q |
1 |
ccctctattggagtgaaattcttaattgacaaacatagtgttctctggcagttatttgactatatgcatatacagatgctttcgtaatttattcatcgca |
100 |
Q |
| |
|
|||||| |||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5331771 |
ccctcttttggggtgaaattcttaattgataaacatagtgttctctggcatttatttgactatatgcatatacagatgctttcgtaatttattcatcgca |
5331672 |
T |
|
| Q |
101 |
tgcttgggttttttaattgcacatatatgtgtcataaagtttaagttacgctactggtttttaactcactcaactaaagcaagattattatttacgtgat |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
5331671 |
tgcttgggttttttaattgcac----atgtgtcataaagtttaagttacgctactagtttttaactcgctcaactaaagcaagattattatttacgtgat |
5331576 |
T |
|
| Q |
201 |
atacaatgcccaatatttaatctactactagttttcatatctg |
243 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
5331575 |
atacaatgccccatatttaatctaatactagttttcatatctg |
5331533 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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