View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14037_low_25 (Length: 246)
Name: NF14037_low_25
Description: NF14037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14037_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 44082308 - 44082093
Alignment:
| Q |
18 |
aagtctgatttcacggaagagtaatatctgaatacattaaatgattttcaatattatatgtcaacttttacttatactatacacaattattatgcatgag |
117 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44082308 |
aagtctgatttcactgaagagtaatatctgaatacattaaatgatgttcaatattatatgtcaacttttacttatactatacacaattattatgcatgag |
44082209 |
T |
|
| Q |
118 |
gccacaagttgctgaaagggaattttatcatctcttatatttctaggctctagcttccctaaaatgtgttatatttaatttaatttaatttcccacagat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
44082208 |
gccacaagttgctgaaagggaattttatcatctcttatatttctaggctctagcttccctaaaatgtgttatatttaattta-----atttcccacagat |
44082114 |
T |
|
| Q |
218 |
ctaagcaatcatgtccctttg |
238 |
Q |
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||||||||||||||||||||| |
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| T |
44082113 |
ctaagcaatcatgtccctttg |
44082093 |
T |
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