View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14037_low_28 (Length: 238)
Name: NF14037_low_28
Description: NF14037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14037_low_28 |
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| [»] chr6 (1 HSPs) |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 20 - 238
Target Start/End: Complemental strand, 4282209 - 4281991
Alignment:
| Q |
20 |
tttatctgattggaattcagttttggtagactacagcaagccgacataatgttgttttctgtgatacgattcggtttgatatatatggagacacgtatct |
119 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
4282209 |
tttatctgattggaattcagttttggtagactaaagcaagccgacataatgttgttttctgtgatacgattcggtttgatatatatggagatacgtatct |
4282110 |
T |
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| Q |
120 |
ttagttatttaattcttgttaaaatccataacagtaagaaccgtgctattacttgtttctaacttctatttcccatcatatggatatattcatattagac |
219 |
Q |
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| T |
4282109 |
ttagttatttaattcttgttaaaatccataagagtaagaaccgtgctattacttgtttctaacttctatttcccaacatatggatatagtcatattagac |
4282010 |
T |
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| Q |
220 |
tttcttatccctctattgg |
238 |
Q |
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||||||||||||||||||| |
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| T |
4282009 |
tttcttatccctctattgg |
4281991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 158; Significance: 3e-84; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 20 - 238
Target Start/End: Original strand, 14673998 - 14674222
Alignment:
| Q |
20 |
tttatctgattggaattcagttttggtagactacagcaagccgacataatgttgttttctgtgatacgattcggtttgatatatatggagacacgtatct |
119 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||| |||| ||||||||||||||||||||| ||| || ||| |
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| T |
14673998 |
tttatctgattggaattcagttttggtagactaaagcaagccgacataatattgtcttctttgatgcgattcggtttgatatatatgaagatttgtgtct |
14674097 |
T |
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| Q |
120 |
ttagttatttaattcttgttaaaatccataacagtaagaaccgtgctattacttgtttctaacttctatttcccatcatatggata------tattcata |
213 |
Q |
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| T |
14674098 |
ttagttatttaattcttgttaaaatccataacagtaagaaccgtgctattacttgtttctaacttctatttcccaacatatggatactgccgtattcata |
14674197 |
T |
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| Q |
214 |
ttagactttcttatccctctattgg |
238 |
Q |
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| T |
14674198 |
ttagactttcttatccctctattgg |
14674222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 20 - 238
Target Start/End: Original strand, 31709650 - 31709874
Alignment:
| Q |
20 |
tttatctgattggaattcagttttggtagactacagcaagccgacataatgttgttttctgtgatacgattcggtttgatatatatggagacacgtatct |
119 |
Q |
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||||||||| |||||||||||||||| |||||| |||||||||||||||| ||||| |||||||| |||||||||||||||||||| |||| || ||| |
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| T |
31709650 |
tttatctgagtggaattcagttttggcagactaaagcaagccgacataatattgttctctgtgatgcgattcggtttgatatatatagagatttgtgtct |
31709749 |
T |
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| Q |
120 |
ttagttatttaattcttgttaaaatccataacagtaagaaccgtgctattacttgtttctaacttctatttcccatcatatggata------tattcata |
213 |
Q |
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| T |
31709750 |
ttagttatttgattcttgttaaaatccataacagtaagaaccgtgctattacttgtttctaacttctatttcccaacatatggatattgccgtattcata |
31709849 |
T |
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| Q |
214 |
ttagactttcttatccctctattgg |
238 |
Q |
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| T |
31709850 |
ttagactttcttatccctctattgg |
31709874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 71 - 170
Target Start/End: Original strand, 18973865 - 18973964
Alignment:
| Q |
71 |
ttgttttctgtgatacgattcggtttgatatatatggagacacgtatctttagttatttaattcttgttaaaatccataacagtaagaaccgtgctatta |
170 |
Q |
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| T |
18973865 |
ttgttttctgtgatgcgattcggtttgatatatatggagatttgtatctttagttatttaatccttgttacaatccataacagtaagaaccgtgctatta |
18973964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 151 - 238
Target Start/End: Original strand, 18974020 - 18974113
Alignment:
| Q |
151 |
cagtaagaaccgtgctattacttgtttctaacttctatttcccatcatatggata------tattcatattagactttcttatccctctattgg |
238 |
Q |
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| T |
18974020 |
cagtaagatccgtgctattacttgtttctaacttctatttcccaacatatggatattgccgtattcatattagactttcttgtccctcttttgg |
18974113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 156; Significance: 5e-83; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 20 - 236
Target Start/End: Complemental strand, 12208482 - 12208260
Alignment:
| Q |
20 |
tttatctgattggaattcagttttggtagactacagcaagccgacataatgttgttttctgtgatacgattcggtttgatatatatggagacacgtatct |
119 |
Q |
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||||||| |||||||||||||||||| |||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||| |||| || ||| |
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| T |
12208482 |
tttatctaattggaattcagttttggcagactaaagcaagccgacataatattgttttctgtgatgcgattcggtttgatatatatagagatttgtgtct |
12208383 |
T |
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| Q |
120 |
ttagttatttaattcttgttaaaatccataacagtaagaaccgtgctattacttgtttctaacttctatttcccatcatatggata------tattcata |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
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| T |
12208382 |
ttagttatttaattcttgttaaaatccataacagtaagaaccgtgctattacttgtttctaacttctatttcccaacatatggatattgccgtattcata |
12208283 |
T |
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| Q |
214 |
ttagactttcttatccctctatt |
236 |
Q |
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| T |
12208282 |
ttagactttcttatccctctatt |
12208260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 71 - 170
Target Start/End: Complemental strand, 19807838 - 19807739
Alignment:
| Q |
71 |
ttgttttctgtgatacgattcggtttgatatatatggagacacgtatctttagttatttaattcttgttaaaatccataacagtaagaaccgtgctatta |
170 |
Q |
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| T |
19807838 |
ttgttttctgtgatgcgattcggtttgatatatatggagatttgtatctttagttatttaatccttgttacaatccataacagtaagaaccgtgctatta |
19807739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 151 - 238
Target Start/End: Complemental strand, 19807683 - 19807590
Alignment:
| Q |
151 |
cagtaagaaccgtgctattacttgtttctaacttctatttcccatcatatggata------tattcatattagactttcttatccctctattgg |
238 |
Q |
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| T |
19807683 |
cagtaagatccgtgctattacttgtttctaacttctatttcccaacatatggatattgccgtattcattttagactttcttgtccctctattgg |
19807590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 71 - 170
Target Start/End: Complemental strand, 5332009 - 5331910
Alignment:
| Q |
71 |
ttgttttctgtgatacgattcggtttgatatatatggagacacgtatctttagttatttaattcttgttaaaatccataacagtaagaaccgtgctatta |
170 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |
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| T |
5332009 |
ttgttttctgtgatacgattcggtttgatatatatggagatttgtatctttagttatttaatccttgttacaatccataacagtaagaaccgtgctatta |
5331910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 151 - 238
Target Start/End: Complemental strand, 5331854 - 5331761
Alignment:
| Q |
151 |
cagtaagaaccgtgctattacttgtttctaacttctatttcccatcatatggata------tattcatattagactttcttatccctctattgg |
238 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||| ||||||| |||| |
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| T |
5331854 |
cagtaagatccgtgctattacttgtttctaacttctatttcccaacatatgcatattgccgtattcatattagactttcttgtccctcttttgg |
5331761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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