View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14037_low_3 (Length: 586)
Name: NF14037_low_3
Description: NF14037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14037_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 536; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 1 - 564
Target Start/End: Original strand, 30715291 - 30715854
Alignment:
| Q |
1 |
agaattccaaaacaaaagttatcagaagaatacaaagacgaggacaacgataataatagtactgatgcaaacgatgtggattctaaatctcaagaggatc |
100 |
Q |
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| T |
30715291 |
agaattccaaaacaaaagttatcagaagaatacaaagacgaggacaacgataataatagtactgatgcagacgatgtggattctgaatctcaagaggatc |
30715390 |
T |
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| Q |
101 |
aacaccgacaatttgaagatgaaaccgaaaaagaggaagaagacaatgatgacgatgacgatgatgtttctgaatccttgtccaatgcaccacatggtaa |
200 |
Q |
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| T |
30715391 |
aacaccgacagtttgaagatgaaaccgaagaagaggaagaagacaatgatgacgatgacgatgatgtttctgaatccttgtccaatgcaccacatggtaa |
30715490 |
T |
|
| Q |
201 |
accatctttctcacaagaagcacacattggcaatgttccagaaagcccttcagtttcttcttataatgtcccaaatcccacacaacccatgaatgcatct |
300 |
Q |
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| T |
30715491 |
accatctttctcacaagaagcacacattggcaatgttccagaaagcccttcagtttcttcttataatgtccgaaatcccacacaacccatgaatgcatct |
30715590 |
T |
|
| Q |
301 |
tcatacataccaatcgctcctttaccaatttttcatggcactccaaacgaatccccaataacccatttgagtcgtttcaacaaagtatgtagagcaaaca |
400 |
Q |
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| T |
30715591 |
tcatacatacaaatcgctcctttaccaatttttcgtggcactccaaacgaatccccaataacccatttgagtcgtttcaacaaagtatgtagagcaaaca |
30715690 |
T |
|
| Q |
401 |
atgcatcctccgttgaaatgcaaaagaagatcttccctgtcacacttgaagaagaatctgcactatggtacgacctcaacatcgagccttattacatttc |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30715691 |
atgcatcctccgttgaaatgcaaaagaagatcttccctgtcacacttgaagaagaatctgcactatggtacgacctcaacatcgagccttattacatttc |
30715790 |
T |
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| Q |
501 |
tctttcatgggatgaaatcaagttgtcgtttttacaagcctattacgaaattgaacccgttgag |
564 |
Q |
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| T |
30715791 |
tctttcatgggatgaaatcaagttgtcgtttttacaagcctattacgaaattgaacccgttgag |
30715854 |
T |
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