View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14037_low_5 (Length: 528)
Name: NF14037_low_5
Description: NF14037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14037_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-140; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 35 - 331
Target Start/End: Original strand, 14744977 - 14745278
Alignment:
| Q |
35 |
ggcaagaatgacgaatataatgatagctggaatgcacttgggcaaaaacaa-gatgagtggtaaggggagatgatcagaaacgacgacaa----gagtta |
129 |
Q |
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| T |
14744977 |
ggcaagaatgacgaatataatgatagctggaatgcacttgggcaaaaacaatgatgagtggtaaggggagatgatcagaaacgacgacaacaacgagtga |
14745076 |
T |
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| Q |
130 |
aggtaaagatgagttaagaaggcattgagtgaccaagaagaagaataaagacgtaaggtttctttttggctgtgttttgagagagaataagtacagaggt |
229 |
Q |
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| T |
14745077 |
aggtaaagatgagttaagaaggcattgagtgaccaagaagaagaataaagacgtaagggttctttttggctgtgttttgagagagaataagtacagagtt |
14745176 |
T |
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| Q |
230 |
ttcatgacaaacatgttttgtattctaacggcgatttgactgaatgtaactggaagggaggtatctgatgctttgcaaagcagaggggacatatgatgat |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||| |
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| T |
14745177 |
ttcatgacaaacatgttttgtattctaacggcgatttgactgaatgtaactggaggggaggtatctgatgctttgcaaaacagaggggacatatgacgat |
14745276 |
T |
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| Q |
330 |
at |
331 |
Q |
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|| |
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| T |
14745277 |
at |
14745278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 318 - 374
Target Start/End: Original strand, 14741622 - 14741678
Alignment:
| Q |
318 |
acatatgatgatattttctcttcacttcccaatataaatacttacaagttttgaacc |
374 |
Q |
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| T |
14741622 |
acatattatgatattttctcttcacttcccaatataaatacttacaagttttgaacc |
14741678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 321 - 374
Target Start/End: Complemental strand, 14283718 - 14283665
Alignment:
| Q |
321 |
tatgatgatattttctcttcacttcccaatataaatacttacaagttttgaacc |
374 |
Q |
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| T |
14283718 |
tatgatgatattttctcttcacctcccaatataaatacttacaagttttgaacc |
14283665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 407 - 457
Target Start/End: Original strand, 14741773 - 14741823
Alignment:
| Q |
407 |
caaaaatcatagcttcaaacgtatttattttcatctgtatatgtactgtat |
457 |
Q |
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| T |
14741773 |
caaaactcatagcttcaaacttatttattttcatctgtatatgtattgtat |
14741823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 318 - 361
Target Start/End: Complemental strand, 15011031 - 15010988
Alignment:
| Q |
318 |
acatatgatgatattttctcttcacttcccaatataaatactta |
361 |
Q |
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| T |
15011031 |
acatatgaagaaattttctcttcacttcccaatataaatactta |
15010988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 374
Target Start/End: Complemental strand, 14290974 - 14290921
Alignment:
| Q |
320 |
atatgatgatattttctcttcacttcccaatataaatacttacaagttttgaacc |
374 |
Q |
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| T |
14290974 |
atatgatgatattttctcttcacctctgaatataaatac-tacaagttttgaacc |
14290921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 318 - 374
Target Start/End: Complemental strand, 23876007 - 23875951
Alignment:
| Q |
318 |
acatatgatgatattttctcttcacttcccaatataaatacttacaagttttgaacc |
374 |
Q |
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||||||||||||||||| |||| ||||||||||||||||||| |||| ||||||||| |
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| T |
23876007 |
acatatgatgatattttttctttacttcccaatataaatactcacaacttttgaacc |
23875951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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