View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14037_low_6 (Length: 515)
Name: NF14037_low_6
Description: NF14037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14037_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 19 - 503
Target Start/End: Original strand, 10918687 - 10919172
Alignment:
| Q |
19 |
tcaacatcttgagccaacctccacctcaaactgagatctaggttttgacagttacgtttttagaatcaatcnnnnnnnnnnnnnnnnnnnnn-gatattt |
117 |
Q |
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| T |
10918687 |
tcaacatcttgagccaacctccacctcaaactgagatctaggttttgacagttacatttttaaaatcaatcaaaaagaagaaaacaaaaaaaagatattt |
10918786 |
T |
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| Q |
118 |
tttaaatccatgtattttactcactgcaaccatgatgtttctggaaaaatccatcgacaaagatgattgatctttttagaatgcacgatttagagatgaa |
217 |
Q |
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| T |
10918787 |
tttaaatccatgtattttactcacggcagccataatgtttctggaaaaacccatcgacaaagacgattgaccttcttagaatgcacgatttagggatgaa |
10918886 |
T |
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| Q |
218 |
aacaaaaggaaagaaaatattacggtcctgagaccaatatgtattccaaatctaacattttcagccaaaccagtactgatctaggtaagtaggtgttgaa |
317 |
Q |
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| T |
10918887 |
aacaaaaggaaagaaaatattacggtcctgagaccaatatgtattcc--agctaccattttcagccaaaccaataccgatctagacaagtaggtgttgaa |
10918984 |
T |
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| Q |
318 |
agtttgttttggtgttgatgaaaaacgtatcagatgaagataaaatggtttgatgaa--ggttcagtgatatgagatgaaagggttcatcattgcaaagg |
415 |
Q |
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| T |
10918985 |
agtttgttttggtgttgatgaaaaacgtatcagatgaagataaaatggtttgacgaaagggttcagtgatatgagatgaaagggttcatcatagcaaagg |
10919084 |
T |
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| Q |
416 |
aaaaaactagaaaaggaaatgaatatgattgtggtgaataatttggggttgatggagaaattttggctcatgattggtgtttgatgat |
503 |
Q |
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| T |
10919085 |
aaaaaactagaaaaggaaatgaatatgattgtggtgaataatttggggttgatacagaaattttggctcatgattggtgtttgatgat |
10919172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 137 - 503
Target Start/End: Original strand, 43958553 - 43958919
Alignment:
| Q |
137 |
ctcactgcaaccatgatgtttctggaaaaatccatcgacaaagatgattgatctttttagaatgcacgatttagagatgaaaacaaaaggaaagaaaata |
236 |
Q |
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| T |
43958553 |
ctcactgcagccatgatgtttctggaaaaacccatcgacaaagacgattgaccttcttagaattcacgatttagggatgaaaacaaaaggaaagaaaata |
43958652 |
T |
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| Q |
237 |
ttacggtcctgagaccaatatgtattccaaatctaacattttcagccaaaccagtactgatctaggtaagtaggtgttgaaagtttgttttggtgttgat |
336 |
Q |
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| T |
43958653 |
ttacggtcctgagaccaatatgtattccag--ctaccattttcagccaaaccagtaccgatctaggcaagtaggtgttgaaagtttgttttggtgttgat |
43958750 |
T |
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| Q |
337 |
gaaaaacgtatcagatgaagataaaatggtttgatgaa--ggttcagtgatatgagatgaaagggttcatcattgcaaaggaaaaaactagaaaaggaaa |
434 |
Q |
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| T |
43958751 |
gaaaaacctatcagatgaagataaaatggtttgatgaaagggttaagtgatatgagatgaaagggttcatcattgcaaaggaaaaaactagaaaaggaaa |
43958850 |
T |
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| Q |
435 |
tgaatatgattgtggtgaataatttggggttgatggagaaattttggctcatgattggtgtttgatgat |
503 |
Q |
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| T |
43958851 |
tgaatataattgtggtgaataatttggggttgatgcagaaattttggctcatgatcggtgtttgatgat |
43958919 |
T |
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