View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14037_low_9 (Length: 428)
Name: NF14037_low_9
Description: NF14037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14037_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 12)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 16 - 304
Target Start/End: Complemental strand, 14742254 - 14741965
Alignment:
| Q |
16 |
tcacttatgtcattcaagcaggaagtaaaacagcatcaggaaggcacatctggagcagttgttccaagcagtggatctactggtatgcacacatcctatt |
115 |
Q |
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| T |
14742254 |
tcacttatgtcattcaagcaggaagtaaagcagcatcaggaaggcacatctggagcatttgatccaagcagtagatctactggtatgcacacatcctatt |
14742155 |
T |
|
| Q |
116 |
tttaattgaatttctttgtggagttgaggtgcagatttggatccctttaaggaataaattttgcaaaagggaagtgtttcaattattgtattttcgactc |
215 |
Q |
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||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
14742154 |
tttaattgagtttctttatggagttgaggtgcagatttggatccctttaaggaataaattttgcaaaagcgaagtgtttcaattattgtattttcgactc |
14742055 |
T |
|
| Q |
216 |
cagaaatgatagaaaatggcaatataaacatgt-acccttttgctgtttatatattaaaggcttactgcctgtgtgattttaatactctg |
304 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||| |||||||||||||||||||| |
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| T |
14742054 |
cagaaatgatagaaaatggcaatataaacatgtaacccttttgctgtttataaattaaaggcttattgcatgtgtgattttaatactctg |
14741965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 33 - 275
Target Start/End: Original strand, 15010407 - 15010650
Alignment:
| Q |
33 |
gcaggaagtaaaacagcatcaggaaggcacatctggagcagttgttccaagcagtggatctactggtatgcacacatcctatttttaattgaatttcttt |
132 |
Q |
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|||||||||| | ||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||| ||||| | ||||||||||| || ||| |
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| T |
15010407 |
gcaggaagtagagcagcatcaggaaggcacatctagagctgttgttccaagcagtagatctactggtatgtgtacatcatgtttttaattgaccttgttt |
15010506 |
T |
|
| Q |
133 |
gtggagttgaggtgcagatttggatccctttaaggaataaattttgc-aaaagggaagtgtttcaatt-attgtattttcgactccagaaatgatagaaa |
230 |
Q |
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|||||||||||||||||| || |||||||| |||||| ||| ||||| ||||| |||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
15010507 |
gtggagttgaggtgcagaatttgatcccttaaaggaagaaaatttgcaaaaagtgaagtgtttcaattgcttgt-ttttcgactccagaaatgatagaaa |
15010605 |
T |
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| Q |
231 |
atggcaatataaacatgtacccttttgctgtttatatattaaagg |
275 |
Q |
| |
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||||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
15010606 |
atggcaatataaacatgtacccttttggtgtttatagcttaaagg |
15010650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 33 - 246
Target Start/End: Original strand, 14290391 - 14290604
Alignment:
| Q |
33 |
gcaggaagtaaaacagcatcaggaaggcacatctggagcagttgttccaagcagtggatctactggtatgcacacatcctatttttaattgaatttcttt |
132 |
Q |
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|||||||||| | ||| ||||||||||||||||| |||| ||||||||||| |||||| |||||||| |||||||| ||||||||||| ||||||| |
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| T |
14290391 |
gcaggaagtagagcaggatcaggaaggcacatctagagctaatgttccaagcactggatccactggtatttccacatcctgtttttaattgattttcttt |
14290490 |
T |
|
| Q |
133 |
gtggagttgaggtgcagatttggatccctttaaggaataaattttgcaaaagggaagtgtttcaatta-ttgtattttcgactccagaaatgatagaaaa |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||| |||||| |||| ||||||||||| |||||||||||||| |
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| T |
14290491 |
gtggagttgaggtgcagatttggatccctttgaggaagaaaatttgcaaaagggaagtgttccaattacttgt-ttttcgactcctgaaatgatagaaaa |
14290589 |
T |
|
| Q |
232 |
tggcaatataaacat |
246 |
Q |
| |
|
||||||||||||||| |
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| T |
14290590 |
tggcaatataaacat |
14290604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 33 - 275
Target Start/End: Original strand, 15053333 - 15053579
Alignment:
| Q |
33 |
gcaggaagtaaaacagcatcaggaaggcacatctggagcagttgttccaagcagtggatctactggtatgcacacatcctatttttaattgaatttcttt |
132 |
Q |
| |
|
|||||||||| | || ||||| |||||||||||| |||| ||||||||||||| | ||||||||||||| |||||||| ||||||||||| ||||| | |
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| T |
15053333 |
gcaggaagtagagcaacatcaagaaggcacatctagagctgttgttccaagcaattgatctactggtatttgcacatcctgtttttaattgattttctat |
15053432 |
T |
|
| Q |
133 |
gtggagttgaggtgcagatttggatccctttaaggaataaattttgcaaaag-----ggaagtgtttcaatta-ttgtattttcgactccagaaatgata |
226 |
Q |
| |
|
|| | || ||||||||||||||| |||||||||| || ||| |||||||||| |||| ||||||||| |||| |||| ||||| ||||||||| |
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| T |
15053433 |
gttg-gtcgaggtgcagatttgggtccctttaagaaagaaaatttgcaaaagaaagtataagtatttcaattacttgt-tttttgactctagaaatgatt |
15053530 |
T |
|
| Q |
227 |
gaaaatggcaatataaacatgtacccttttgctgtttatatattaaagg |
275 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
15053531 |
gaaaatggcaatataaacatgtaccattttgctgtttataacttaaagg |
15053579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 176 - 307
Target Start/End: Original strand, 14283223 - 14283354
Alignment:
| Q |
176 |
ttgcaaaagggaagtgtttcaatta-ttgtattttcgactccagaaatgatagaaaatggcaatataaacatgtacccttttgctgtttatatattaaag |
274 |
Q |
| |
|
||||||||||||||||||||||||| |||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
14283223 |
ttgcaaaagggaagtgtttcaattacttgt-tattcgactccagaaattctagaaaatggcaatataaacatgtacccttttgctgttcataacttaaag |
14283321 |
T |
|
| Q |
275 |
gcttactgcctgtgtgattttaatactctgttg |
307 |
Q |
| |
|
| |||| ||||||||| |||| |||||||| |
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| T |
14283322 |
gtacactgtatgtgtgattataatgctctgttg |
14283354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 333 - 404
Target Start/End: Complemental strand, 14741961 - 14741890
Alignment:
| Q |
333 |
gtagtatgagtcttttactttgccatatttctaactggagttgattatcaatcttgaacgaaataactgaac |
404 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| | |||||||||| |
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| T |
14741961 |
gtagtatgagtcttttactttgccatgtttctagctggagttgattatcaatcttgaacaatataactgaac |
14741890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 50 - 159
Target Start/End: Complemental strand, 15056253 - 15056144
Alignment:
| Q |
50 |
atcaggaaggcacatctggagcagttgttccaagcagtggatctactggtatgcacacatcctatttttaattgaatttctttgtggagttgaggtgcag |
149 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||| || |||||||||||||| ||||||| |||||||||| ||||| |||| |||| ||| |||| |
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| T |
15056253 |
atcaggaaggcacatctagagctgttgttccaagccgtagatctactggtatgtgtacatcctgcttttaattgattttctctgtgaagttaaggcgcag |
15056154 |
T |
|
| Q |
150 |
atttggatcc |
159 |
Q |
| |
|
|||||||||| |
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|
| T |
15056153 |
atttggatcc |
15056144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 333 - 397
Target Start/End: Original strand, 15053617 - 15053681
Alignment:
| Q |
333 |
gtagtatgagtcttttactttgccatatttctaactggagttgattatcaatcttgaacgaaata |
397 |
Q |
| |
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||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
15053617 |
gtagtatgagtcttttactgtgccatgtttctaactggagttgattatcaatcttgaacaaaata |
15053681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 330 - 391
Target Start/End: Original strand, 15010685 - 15010746
Alignment:
| Q |
330 |
ctggtagtatgagtcttttactttgccatatttctaactggagttgattatcaatcttgaac |
391 |
Q |
| |
|
||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||| |
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|
| T |
15010685 |
ctggtagtatgagtcgtttactgtgccatgtttctaactggagttgattatcaatcttgaac |
15010746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 80 - 169
Target Start/End: Original strand, 14283104 - 14283196
Alignment:
| Q |
80 |
caagcagtggatctactggtatgcacacatcctattttt---aattgaatttctttgtggagttgaggtgcagatttggatccctttaaggaa |
169 |
Q |
| |
|
|||||| ||||||||||||||| |||||||| ||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
14283104 |
caagcactggatctactggtatttgcacatcctgttttttttaattgcttttctttgtggcgttgaggtgcagatttggatccctttaaggaa |
14283196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 338 - 400
Target Start/End: Original strand, 14283356 - 14283417
Alignment:
| Q |
338 |
atgagtcttttactttgccatatttctaactggagttgattatcaatcttgaacgaaataact |
400 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||||||||| ||||||||| |||||||| |
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|
| T |
14283356 |
atgagtcttttactgtgccatttttctaactggagttgattatcgatcttgaac-aaataact |
14283417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 360 - 400
Target Start/End: Original strand, 14290660 - 14290699
Alignment:
| Q |
360 |
tttctaactggagttgattatcaatcttgaacgaaataact |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
14290660 |
tttctaactggagttgattatcaatcttgaac-aaataact |
14290699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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