View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14038_high_13 (Length: 431)
Name: NF14038_high_13
Description: NF14038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14038_high_13 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 414
Target Start/End: Complemental strand, 33417130 - 33416719
Alignment:
| Q |
1 |
agatagtccacgtggttaaataaaaacaaaagaaaactcnnnnnnn-gttcaagtgataatataattagttgtggaaattcaacctcgtcttagtaaaag |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | | |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33417130 |
agatagtccacgtggttaaataaaaacaaaagaatatttttttttttgttcaagtaataatataattagttgtggaaattcaacctcgtcttagtaaaag |
33417031 |
T |
|
| Q |
100 |
ccgaccaaatccggtagccgaatataatagcatacatatactctattattgtcgtgttgaaaaaatctatatacacacatctatataagaattgcacaat |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33417030 |
ccgaccaaatccggtagccgaatataatagcatacatatactctattattgtcgtgtcgataaaatctatatacacacatctatataagaattgcacaat |
33416931 |
T |
|
| Q |
200 |
tcatcaaaatcaaaacaaataacatttgcgcagcatttgctagctagctattcttttgattgagattttatattctagggag-nnnnnnnntcttgacac |
298 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
33416930 |
tcatcaaaatcaaaacaaat---atttgcgcagcatttgctagctagctattcttttgattgagattttatattctagggagaaaaaaaaatcttgacac |
33416834 |
T |
|
| Q |
299 |
tcannnnnnngaagttaatttctacaattagagagaaatattttccaaactcaaattttgatcaaatggcttcttctcgtgtagttttgatcctttccat |
398 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33416833 |
tcattttttt-aagttaatttctacaattagagagaaatattttccaaactcaaattttgatcaaatggcttcttctcgtgtagttttgatcctttccat |
33416735 |
T |
|
| Q |
399 |
ttccatggttttactt |
414 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
33416734 |
ttccatggttttactt |
33416719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 310 - 414
Target Start/End: Complemental strand, 33424891 - 33424787
Alignment:
| Q |
310 |
aagttaatttctacaattagagagaaatattttccaaactcaaattttgatcaaatggcttcttctcgtgtagttttgatcctttccatttccatggttt |
409 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33424891 |
aagttaatttctacatttagagagaaatattttccaaaatcaaattttgatcaaatggcttcttctcgtgtagttttgatcctttccatttccatggttt |
33424792 |
T |
|
| Q |
410 |
tactt |
414 |
Q |
| |
|
||||| |
|
|
| T |
33424791 |
tactt |
33424787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 330 - 414
Target Start/End: Complemental strand, 33410956 - 33410872
Alignment:
| Q |
330 |
agagaaatattttccaaactcaaattttgatcaaatggcttcttctcgtgtagttttgatcctttccatttccatggttttactt |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
33410956 |
agagaaatattttccaaactcaaattttgatcaaatggcttcttctcgtgtagttttgatcctttctatttccatggttttactt |
33410872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 61 - 178
Target Start/End: Complemental strand, 33411224 - 33411108
Alignment:
| Q |
61 |
ataattagttgtggaaattcaacctcgtcttagtaaaagccgaccaaatccggtagccgaatataatagcatacatatactctattattgtcgtgttgaa |
160 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||| ||| ||||||||||| ||| || |
|
|
| T |
33411224 |
ataataagttgtggaaattcaacctcgtcttagtaaa-gccgaccaaatccggtagccgtttataatagcaaacaaatattctattattgttgtgacgat |
33411126 |
T |
|
| Q |
161 |
aaaatctatatacacaca |
178 |
Q |
| |
|
|||||| ||| ||||||| |
|
|
| T |
33411125 |
aaaatcaatacacacaca |
33411108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 61 - 151
Target Start/End: Complemental strand, 33425145 - 33425054
Alignment:
| Q |
61 |
ataattagttgtggaaattcaacctcgtcttagtaaaa-gccgaccaaatccggtagccgaatataatagcatacatatactctattattgt |
151 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||| ||| ||||||||||| |
|
|
| T |
33425145 |
ataataagttgtggaaattcaacctcgtcttagtaaaaagccgaccaaatccggtagccgtttataatagcaaacaaatattctattattgt |
33425054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 197 - 266
Target Start/End: Original strand, 33427441 - 33427508
Alignment:
| Q |
197 |
aattcatcaaaatcaaaacaaataacatttgcgcagcatttgctagctagctattcttttgattgagatt |
266 |
Q |
| |
|
||||||||||| ||||||||| |||||||| || ||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
33427441 |
aattcatcaaa-tcaaaacaa-taacattttcgaagcatttgctagctagcaattcttttcattgagatt |
33427508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 38
Target Start/End: Complemental strand, 33425259 - 33425227
Alignment:
| Q |
6 |
gtccacgtggttaaataaaaacaaaagaaaact |
38 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
33425259 |
gtccacgtggttaaataaaaacaaaagaaaact |
33425227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 38
Target Start/End: Complemental strand, 33411525 - 33411493
Alignment:
| Q |
6 |
gtccacgtggttaaataaaaacaaaagaaaact |
38 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |
|
|
| T |
33411525 |
gtccacgtggttaaataaaaacaaatgaaaact |
33411493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University