View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14038_high_15 (Length: 390)
Name: NF14038_high_15
Description: NF14038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14038_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 10 - 371
Target Start/End: Original strand, 46525955 - 46526327
Alignment:
| Q |
10 |
aagaatatcttgatgacatgaaagcaggccccacaccatacccccc-acaaataataaacaatagcagcactgcacgagctgaatttctctcgtgcacaa |
108 |
Q |
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| T |
46525955 |
aagaatatcttgatgacatgaaatcaggccccacaccatacccccccacaaataataaacaatagcagcactgcacgagctgaatttctctcgtgcacaa |
46526054 |
T |
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| Q |
109 |
catctttgcctcacttattataatttatatactgtatatgtgtgtgtgaga----------gagagagcgagctcatgcaactatgaaattatttctcaa |
198 |
Q |
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| T |
46526055 |
catctttgcctcacttattataatttatataatgtatatgtgtgtgtgagagagagagagagagagagcgagctcatggaactatgaaattatttctcaa |
46526154 |
T |
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| Q |
199 |
ggaaaagtggtagcagtgaggagaaagtttatattattatgcccataaaaaagaaagagtggtaagtcatacacactgacacacaattccaatacgcaac |
298 |
Q |
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| T |
46526155 |
ggaaaagtggtagcagtgaggagaaagtttatattattatgcccataaaaaagaaagagttgtaagtcatacacactgacacacaattccaatacgcaac |
46526254 |
T |
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| Q |
299 |
aatgttaatgttcgttcattaattacatttttatactatattgttagtttcttgttatttgcatgtaatgcat |
371 |
Q |
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| T |
46526255 |
aatgtcaatgttcgttcattaattacatttttatactatattgttagtttcttgttatttgcatgtaatgcat |
46526327 |
T |
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