View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14038_high_17 (Length: 387)
Name: NF14038_high_17
Description: NF14038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14038_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 7 - 385
Target Start/End: Original strand, 33918525 - 33918895
Alignment:
| Q |
7 |
tcaaatgctttgaggatatcagcaccgtccaacaggaacgtcccagcaagctttgtagatagccaaatgagctaaggtagctcctcctcttgctaaacca |
106 |
Q |
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| T |
33918525 |
tcaaatgctttgaggatatcagcatcgtccaacaggaacgtcccagcaagctttgtagatagccaaatgagctaaggcagctcctcctcttgctaaacca |
33918624 |
T |
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| Q |
107 |
gaagcaagcaagtcctcaataatttgcattttttacaaaatatccagctgatgttgaagctgtgtgagatccatggccagtagcatctctggttgagaga |
206 |
Q |
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| T |
33918625 |
gaagtaagcaagtcctctataatttgcattttttacaaaatatccagct-atgttgaagctgtgtgagatccatggccagtagcatctctggttgagaga |
33918723 |
T |
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| Q |
207 |
tattctgaagtgtcggtgtttccgaggatcaaggatgaggttcttagtgtgatcagtcattccttttaggaagcatctagcaccaattatcttcttgttg |
306 |
Q |
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| T |
33918724 |
tattctgaagtgtcggtgtttc-------caaggatgaggttcttagtgtgatcagtcattccttttaggaagcatctagcaccaattatcttcttgttg |
33918816 |
T |
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| Q |
307 |
cagtttgtggagtagagttgaaattttctctaacttgacaaactcctttccactttgatggaatgtttccctttgcttc |
385 |
Q |
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| T |
33918817 |
cagtttgtggagtagagttgaaattttctctaacttgacaaactcctttccactttgatggaatttttcccattgcttc |
33918895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 7 - 385
Target Start/End: Complemental strand, 35082889 - 35082519
Alignment:
| Q |
7 |
tcaaatgctttgaggatatcagcacc--------gtccaacaggaacgtcccagcaagctttgtagatagccaaatgagctaaggtagctcctcctcttg |
98 |
Q |
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|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||| |
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| T |
35082889 |
tcaaatgctttgaggatatcagcatcagtacagtgtccaacaggaacgtcccagcaagctttgtagatagccaagtgagctaaaggtgctcctcctcttg |
35082790 |
T |
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| Q |
99 |
ctaaaccagaagcaagcaagtcctcaataatttgcattttttacaaaatatccagctgatgttgaagctgtgtgagatccatggccagtagcatctctgg |
198 |
Q |
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|||||||||||||||| |||| |||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||| | |
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| T |
35082789 |
ctaaaccagaagcaagg----cctctataatttgcattttctacaaaatatccagctgctgttgaagctgtgtgagttccatggccaatagcatctctag |
35082694 |
T |
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| Q |
199 |
ttgagagatattctgaagtgtcggtgtttccgaggatcaaggatgaggttcttagtgtgatcagtcattccttttaggaagcatctagcaccaattatct |
298 |
Q |
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|||||||||||||| |||||| |||||| |||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |
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| T |
35082693 |
ctgagagatattctgtagtgtcattgtttc-------caaggacgaggttcttagtgtgatcagttattccttttaggaaccatctagcaccaattatct |
35082601 |
T |
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| Q |
299 |
tcttgttgcagtttgtggagtagagttgaaattttctctaacttgacaaactcctttccactttgatggaatgtttccctttgcttc |
385 |
Q |
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||||||||||||||||| ||||| || ||||| | ||||||||||||||||||||||||||||||||| || ||| ||||||| |
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| T |
35082600 |
tcttgttgcagtttgtg-----gagttaaatttttcaccaacttgacaaactcctttccactttgatggaattttccccattgcttc |
35082519 |
T |
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