View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14038_high_2 (Length: 876)
Name: NF14038_high_2
Description: NF14038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14038_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 452; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 18 - 539
Target Start/End: Original strand, 28615437 - 28615958
Alignment:
| Q |
18 |
acaaattgaaactggacaccaagagtggaaaacttgtacaaatgaacaggcttgagagtttgggagacaacattttatttatcagatattgtggtaattc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28615437 |
acaaattgaaactggacaccaagagtggaaaacttgtacaaatgaacatgcttaagagtttgggagacaacattttatttatcagatattgtggtaattc |
28615536 |
T |
|
| Q |
118 |
attttctgtgtctgcctcttgtttctccaagttnnnnnnngattcagtttattttctctgtgagagtgttccagaagatttagggtttgggatctataat |
217 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28615537 |
attttctgtgtctgcctcttgtttctccaagttaaaaaaagattcagtttattttctctgtgagagtgttccagaagatttagggtttgggatctataat |
28615636 |
T |
|
| Q |
218 |
gtgaaggatggaagctatcagatacaatctttaccactttccttcgagcagacgcaannnnnnngggctctacctcaatttcaatgggattgattgatca |
317 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
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| T |
28615637 |
gtgaaggatggaagctatcagatacaatctttaccactttccttcgagcagacacaattttcttgggctctacctcaatttcaatgggattgattgatca |
28615736 |
T |
|
| Q |
318 |
gttcatctttaagttaggtattctaattaattatccattcaattatatcgatcgtatcctttaatgcttgctaagtttggtttcatcacctgtttgttat |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
28615737 |
gttcatctttaagttaggtattctaattaattatccattcaattatatcgatcgtatcctttaatgcttgctaagtttggtttcatcacctgcttgttat |
28615836 |
T |
|
| Q |
418 |
ttccgtgtccacaggccattctgatctgattgtgattgtcatgctgcgtaccaagtaactgatatgaagttggaatctcacccatgtttcacatgatgtt |
517 |
Q |
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||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
28615837 |
ttccgtgcctacaggccattctgatctgattgtgattgtcatgctgcgtaccaagtaactgatatgatgttggaatctcacccatgtttcacatgatgtt |
28615936 |
T |
|
| Q |
518 |
ttaatatttaaccaataaaaaa |
539 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
28615937 |
ttaatatttaaccaataaaaaa |
28615958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 196 - 658
Target Start/End: Original strand, 28617773 - 28618232
Alignment:
| Q |
196 |
tttagggtttgggatctataatgtgaaggatggaagctatcagatacaatctttaccactttccttcgagcagacgcaannnnnnngggctctacctcaa |
295 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||| || |||||| |||||||| ||||||||| ||| || |||| || |||||| ||| |
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| T |
28617773 |
tttagggttcgggatctataatgtgaaggatggaagctgtcggataca-tctttaccgctttccttcaagcggatgcaatttttttggcttctaccacaa |
28617871 |
T |
|
| Q |
296 |
tttcaatgggattgattgatcagttcatctttaagttaggtattctaattaattatccattcaattatatcgatcgtatcctttaatgcttgctaagttt |
395 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||| |||| |||||||| |||||||||| |||||||| |
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|
| T |
28617872 |
tttcaatgggattgattgatcagttcatctttaagttaggtattttaattaatgattcattcaattgtatcaatcgtatcttttaatgctttctaagttt |
28617971 |
T |
|
| Q |
396 |
ggtttcatcacctgtttgttatttccgtgtccacaggccattctgatctgattgtgattgtcatgctgcgtaccaagtaactgatatgaagttggaatct |
495 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||| |
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| T |
28617972 |
ggtttcatcacctgtttgttatttccgtgcctacaggccattctgatctgattgtgattgtcatgctgcgtaccaagtaactcagaagaagttggaatct |
28618071 |
T |
|
| Q |
496 |
cacccatgtttcacatgatgttttaatatttaaccaataaaaaatattcttggaagaatttccttctggtatttatgttatgtgctcacattgctgtact |
595 |
Q |
| |
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||||||| ||||||||||||||||||||||||| |||||||||| | |||| ||||| || ||||||||| ||| |||| |||| |||||||||||| || |
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| T |
28618072 |
cacccatatttcacatgatgttttaatatttaagcaataaaaaa-agtctt-gaagacttcccttctggtgtttctgttttgtggtcacattgctgtgct |
28618169 |
T |
|
| Q |
596 |
gcctattgtatcttatgcggtgtatgtcagattggttttgctgctcagagatatcttatcttc |
658 |
Q |
| |
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||||||| ||||||||| |||||||||||| | ||||| ||||||||||||||||||||||| |
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|
| T |
28618170 |
gcctattttatcttatgttgtgtatgtcagaatagttttcctgctcagagatatcttatcttc |
28618232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 18 - 363
Target Start/End: Complemental strand, 28612269 - 28611924
Alignment:
| Q |
18 |
acaaattgaaactggacaccaagagtggaaaacttgtacaaatgaacaggcttgagagtttgggagacaacattttatttatcagatattgtggtaattc |
117 |
Q |
| |
|
|||||||| ||||||| | ||||||||||||||| ||| ||||||| ||||||||||||| |||||||||||||||| || || |||| || |||| |
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| T |
28612269 |
acaaattggaactggatgtccagagtggaaaacttgaacagatgaacaaacttgagagtttggaagacaacattttatttgtcgga-attg--gtgattc |
28612173 |
T |
|
| Q |
118 |
attttctgtgtctgcctcttgtttctccaagttnnnnnnngattcagtttattttctctgtgagagtgttccagaagatttagggtttgggatctataat |
217 |
Q |
| |
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| |||||||| | ||||||||| ||||||||| ||||| |||||||| | | ||| || | || ||||||| || ||| |||||||| |
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|
| T |
28612172 |
aatttctgtgccagcctcttgtcactccaagttagaaaaagattcgatttattttatttatgactatgatatggatgatttagcattaggggtctataat |
28612073 |
T |
|
| Q |
218 |
gtgaaggatggaagctatcagatacaatctttaccactttccttcgagcagacgcaannnnnnngggctctacctcaatttcaatgggattgattgatca |
317 |
Q |
| |
|
||||||||||||||| ||| | ||||||||||| |||||||| || || |||| ||| ||| || |||||||| ||||| |||||||||| |
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| T |
28612072 |
atgaaggatggaagctgtcaaaggcaatctttaccgatttccttcaagtggatgcaacctttttgggttctgccacaatttcagtgggactgattgatca |
28611973 |
T |
|
| Q |
318 |
gttcatctttaagttaggtattctaatta---attatccattcaattat |
363 |
Q |
| |
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|||||||||||||||||||||| || ||| ||||||||||||||||| |
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| T |
28611972 |
gttcatctttaagttaggtattttagttaacgattatccattcaattat |
28611924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 150
Target Start/End: Original strand, 29288415 - 29288546
Alignment:
| Q |
19 |
caaattgaaactggacaccaagagtggaaaacttgtacaaatgaacaggcttgagagtttgggagacaacattttatttatcagatattgtggtaattca |
118 |
Q |
| |
|
||||||| ||||||| || ||||||||||||||| ||| ||||||| ||||||||||||| |||||||||||||||| || || | |||| |||| |
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| T |
29288415 |
caaattggaactggatgcccagagtggaaaacttgaacagatgaacaaacttgagagtttggaagacaacattttatttgtcggaagtgttggtgattcc |
29288514 |
T |
|
| Q |
119 |
ttttctgtgtctgcctcttgtttctccaagtt |
150 |
Q |
| |
|
|||||||| | |||||| |||||||||||| |
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| T |
29288515 |
atttctgtgccggcctctgctttctccaagtt |
29288546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 150
Target Start/End: Original strand, 29282976 - 29283107
Alignment:
| Q |
19 |
caaattgaaactggacaccaagagtggaaaacttgtacaaatgaacaggcttgagagtttgggagacaacattttatttatcagatattgtggtaattca |
118 |
Q |
| |
|
||||||| ||||||| || ||||||||||||| | ||| ||||||| ||||||||||||| ||||| |||||||||| || || | |||| ||||| |
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| T |
29282976 |
caaattggaactggatgcccagagtggaaaactagaacacatgaacaaacttgagagtttggaagacagcattttatttgtcggaagtgttggtgattca |
29283075 |
T |
|
| Q |
119 |
ttttctgtgtctgcctcttgtttctccaagtt |
150 |
Q |
| |
|
| |||||| | |||||| |||||||||||| |
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|
| T |
29283076 |
atatctgtgccagcctctgctttctccaagtt |
29283107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 615 - 658
Target Start/End: Original strand, 28616283 - 28616326
Alignment:
| Q |
615 |
gtgtatgtcagattggttttgctgctcagagatatcttatcttc |
658 |
Q |
| |
|
|||||| |||||||| ||||||||| |||||||||||||||||| |
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|
| T |
28616283 |
gtgtatatcagattgattttgctgcacagagatatcttatcttc |
28616326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 93
Target Start/End: Original strand, 28623327 - 28623377
Alignment:
| Q |
43 |
tggaaaacttgtacaaatgaacaggcttgagagtttgggagacaacatttt |
93 |
Q |
| |
|
||||||||||| ||||||||||| ||| ||||||||| |||||||||||| |
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|
| T |
28623327 |
tggaaaacttgaacaaatgaacaaacttaagagtttggaagacaacatttt |
28623377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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