View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14038_high_31 (Length: 290)
Name: NF14038_high_31
Description: NF14038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14038_high_31 |
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Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 281
Target Start/End: Original strand, 28615437 - 28615700
Alignment:
| Q |
18 |
acaaattgaaactggacaccaagagtggaaaacttgtacaaatgaacaggcttgagagtttgggagacaacattttatttatcagatattgtggtaattc |
117 |
Q |
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| T |
28615437 |
acaaattgaaactggacaccaagagtggaaaacttgtacaaatgaacatgcttaagagtttgggagacaacattttatttatcagatattgtggtaattc |
28615536 |
T |
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| Q |
118 |
attttctgtgtctgcctcttgtttctccaagttnnnnnnngattcagtttattttctctgtgagagtgttccagaagatttagggtttgggatctataat |
217 |
Q |
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| T |
28615537 |
attttctgtgtctgcctcttgtttctccaagttaaaaaaagattcagtttattttctctgtgagagtgttccagaagatttagggtttgggatctataat |
28615636 |
T |
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| Q |
218 |
gtgaaggatggaagctatcagatacaatctttaccactttccttcgagcagacgcaattttctt |
281 |
Q |
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| T |
28615637 |
gtgaaggatggaagctatcagatacaatctttaccactttccttcgagcagacacaattttctt |
28615700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 196 - 278
Target Start/End: Original strand, 28617773 - 28617854
Alignment:
| Q |
196 |
tttagggtttgggatctataatgtgaaggatggaagctatcagatacaatctttaccactttccttcgagcagacgcaatttt |
278 |
Q |
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| T |
28617773 |
tttagggttcgggatctataatgtgaaggatggaagctgtcggatac-atctttaccgctttccttcaagcggatgcaatttt |
28617854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 150
Target Start/End: Original strand, 29288415 - 29288546
Alignment:
| Q |
19 |
caaattgaaactggacaccaagagtggaaaacttgtacaaatgaacaggcttgagagtttgggagacaacattttatttatcagatattgtggtaattca |
118 |
Q |
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| T |
29288415 |
caaattggaactggatgcccagagtggaaaacttgaacagatgaacaaacttgagagtttggaagacaacattttatttgtcggaagtgttggtgattcc |
29288514 |
T |
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| Q |
119 |
ttttctgtgtctgcctcttgtttctccaagtt |
150 |
Q |
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| T |
29288515 |
atttctgtgccggcctctgctttctccaagtt |
29288546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 28612269 - 28612140
Alignment:
| Q |
18 |
acaaattgaaactggacaccaagagtggaaaacttgtacaaatgaacaggcttgagagtttgggagacaacattttatttatcagatattgtggtaattc |
117 |
Q |
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|||||||| ||||||| | ||||||||||||||| ||| ||||||| ||||||||||||| |||||||||||||||| || || || |||| |||| |
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| T |
28612269 |
acaaattggaactggatgtccagagtggaaaacttgaacagatgaacaaacttgagagtttggaagacaacattttatttgtcgga-at--tggtgattc |
28612173 |
T |
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| Q |
118 |
attttctgtgtctgcctcttgtttctccaagtt |
150 |
Q |
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| T |
28612172 |
aatttctgtgccagcctcttgtcactccaagtt |
28612140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 150
Target Start/End: Original strand, 29282976 - 29283107
Alignment:
| Q |
19 |
caaattgaaactggacaccaagagtggaaaacttgtacaaatgaacaggcttgagagtttgggagacaacattttatttatcagatattgtggtaattca |
118 |
Q |
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||||||| ||||||| || ||||||||||||| | ||| ||||||| ||||||||||||| ||||| |||||||||| || || | |||| ||||| |
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| T |
29282976 |
caaattggaactggatgcccagagtggaaaactagaacacatgaacaaacttgagagtttggaagacagcattttatttgtcggaagtgttggtgattca |
29283075 |
T |
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| Q |
119 |
ttttctgtgtctgcctcttgtttctccaagtt |
150 |
Q |
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| |||||| | |||||| |||||||||||| |
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| T |
29283076 |
atatctgtgccagcctctgctttctccaagtt |
29283107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 93
Target Start/End: Original strand, 28623327 - 28623377
Alignment:
| Q |
43 |
tggaaaacttgtacaaatgaacaggcttgagagtttgggagacaacatttt |
93 |
Q |
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||||||||||| ||||||||||| ||| ||||||||| |||||||||||| |
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| T |
28623327 |
tggaaaacttgaacaaatgaacaaacttaagagtttggaagacaacatttt |
28623377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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