View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14038_high_33 (Length: 276)

Name: NF14038_high_33
Description: NF14038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14038_high_33
NF14038_high_33
[»] chr6 (16 HSPs)
chr6 (15-236)||(34898731-34898950)
chr6 (116-236)||(34620921-34621041)
chr6 (116-236)||(34748358-34748478)
chr6 (165-236)||(1485125-1485196)
chr6 (115-229)||(882728-882842)
chr6 (128-236)||(34027359-34027467)
chr6 (165-236)||(31305826-31305897)
chr6 (192-236)||(2234550-2234595)
chr6 (128-232)||(25388116-25388219)
chr6 (165-236)||(4910943-4911014)
chr6 (113-202)||(434163-434253)
chr6 (106-160)||(19601372-19601426)
chr6 (198-236)||(30926790-30926828)
chr6 (118-160)||(34026417-34026459)
chr6 (180-236)||(852567-852623)
chr6 (176-236)||(17225887-17225947)
[»] chr4 (12 HSPs)
chr4 (104-219)||(33843763-33843878)
chr4 (165-236)||(55927749-55927820)
chr4 (190-236)||(4243422-4243468)
chr4 (196-236)||(33844012-33844052)
chr4 (165-236)||(8604601-8604672)
chr4 (109-160)||(48045675-48045726)
chr4 (190-236)||(2207114-2207160)
chr4 (170-236)||(32818354-32818420)
chr4 (166-211)||(25319108-25319153)
chr4 (190-227)||(32100336-32100373)
chr4 (176-236)||(10185229-10185289)
chr4 (176-235)||(16551993-16552050)
[»] chr7 (11 HSPs)
chr7 (104-236)||(27571897-27572029)
chr7 (113-236)||(45557400-45557523)
chr7 (106-234)||(40561678-40561806)
chr7 (106-216)||(33853404-33853514)
chr7 (118-236)||(38123598-38123716)
chr7 (112-236)||(22310385-22310509)
chr7 (166-232)||(40795969-40796035)
chr7 (128-232)||(12306760-12306866)
chr7 (165-234)||(41788353-41788422)
chr7 (106-135)||(45823307-45823336)
chr7 (128-236)||(40491613-40491721)
[»] chr2 (11 HSPs)
chr2 (110-236)||(1976788-1976916)
chr2 (165-236)||(44439289-44439360)
chr2 (165-211)||(15220840-15220886)
chr2 (165-236)||(16013683-16013760)
chr2 (164-234)||(37420171-37420243)
chr2 (97-135)||(11650668-11650706)
chr2 (190-236)||(42741012-42741058)
chr2 (164-209)||(40401621-40401666)
chr2 (106-150)||(3476349-3476393)
chr2 (165-209)||(4908852-4908896)
chr2 (176-236)||(42982579-42982639)
[»] scaffold0361 (1 HSPs)
scaffold0361 (165-236)||(14093-14164)
[»] chr3 (15 HSPs)
chr3 (108-232)||(36302222-36302348)
chr3 (111-236)||(46853459-46853584)
chr3 (97-236)||(51285605-51285744)
chr3 (167-236)||(35264392-35264461)
chr3 (168-236)||(40147832-40147900)
chr3 (190-258)||(30301002-30301070)
chr3 (190-236)||(35058396-35058443)
chr3 (170-236)||(31708223-31708289)
chr3 (110-211)||(5406964-5407061)
chr3 (165-236)||(27266773-27266844)
chr3 (177-236)||(37335025-37335084)
chr3 (110-229)||(40136096-40136214)
chr3 (126-236)||(3776557-3776667)
chr3 (165-235)||(35253446-35253516)
chr3 (165-226)||(29475364-29475425)
[»] chr1 (21 HSPs)
chr1 (111-226)||(1233350-1233465)
chr1 (165-236)||(48548993-48549062)
chr1 (190-232)||(28287340-28287382)
chr1 (171-236)||(213522-213587)
chr1 (164-229)||(1514385-1514450)
chr1 (106-207)||(6932104-6932205)
chr1 (190-234)||(20026168-20026212)
chr1 (190-234)||(24587949-24587993)
chr1 (164-228)||(52263625-52263689)
chr1 (165-236)||(4458421-4458492)
chr1 (165-236)||(34915101-34915172)
chr1 (190-236)||(7790646-7790692)
chr1 (190-235)||(8382002-8382047)
chr1 (191-236)||(47892393-47892438)
chr1 (168-236)||(3016197-3016265)
chr1 (176-236)||(10324928-10324988)
chr1 (196-236)||(17284131-17284171)
chr1 (165-236)||(30557539-30557608)
chr1 (180-232)||(30850393-30850445)
chr1 (138-202)||(35961437-35961501)
chr1 (177-233)||(52339719-52339775)
[»] chr8 (9 HSPs)
chr8 (127-232)||(16972005-16972110)
chr8 (165-232)||(32927931-32927998)
chr8 (165-236)||(35495295-35495366)
chr8 (190-236)||(13384658-13384704)
chr8 (165-236)||(32767422-32767495)
chr8 (111-157)||(38386430-38386476)
chr8 (107-207)||(2778577-2778677)
chr8 (128-236)||(26100088-26100196)
chr8 (106-134)||(43024963-43024991)
[»] chr5 (8 HSPs)
chr5 (111-236)||(15368508-15368632)
chr5 (165-233)||(8591519-8591587)
chr5 (130-217)||(35138967-35139054)
chr5 (166-236)||(36639972-36640042)
chr5 (189-226)||(7925431-7925468)
chr5 (106-151)||(9952555-9952600)
chr5 (191-235)||(9185020-9185064)
chr5 (167-211)||(37886019-37886063)


Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 15 - 236
Target Start/End: Complemental strand, 34898950 - 34898731
Alignment:
Q  15 cacagaggtcccgttcttgccatgatcataagcagctacggtaggcctctccctctagtagtcttttcaaaattaagtgtatgtttggcgttgacaaaaa 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  34898950 cacagaggtcccgttcttgccatgatcataagcagctacggtaggcctctccctctagtagtattttcaaaattaagtgtatgtttggcgttgacaaaaa 34898851  T
Q  115 ttgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcga 214  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  34898850 ttgattttgattgaattgattctggc-taaagtgagtcgaaggtaatacaatttatg-ttcgatacatttgtgttaaagtgagttgaacaataaattcga 34898753  T
Q  215 gtgttaaaatcaattctagaat 236  Q
    ||||||||||||||||||||||    
T  34898752 gtgttaaaatcaattctagaat 34898731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 116 - 236
Target Start/End: Complemental strand, 34621041 - 34620921
Alignment:
Q  116 tgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgag 215  Q
    ||||||||| ||||| ||||||||||  || ||||| |||| |||    |||||||||| ||||||||  ||| ||||||||||||| ||||||||  ||    
T  34621041 tgattttgagtgaatggattctggctagaattgagttgaaggtaaagtgatttatgtttggatacatttatgtaaaagtgagttgaaaaataaattttag 34620942  T
Q  216 tgttaaaatcaattctagaat 236  Q
    ||| |||||||||||||||||    
T  34620941 tgtaaaaatcaattctagaat 34620921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 116 - 236
Target Start/End: Complemental strand, 34748478 - 34748358
Alignment:
Q  116 tgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgag 215  Q
    ||||||||| ||||| ||||||||||  || ||||| |||| |||    |||||||||| ||||||||  ||| ||||||||||||| ||||||||  ||    
T  34748478 tgattttgagtgaatggattctggctagaattgagttgaaggtaaagtgatttatgtttggatacatttatgtaaaagtgagttgaaaaataaattttag 34748379  T
Q  216 tgttaaaatcaattctagaat 236  Q
    ||| |||||||||||||||||    
T  34748378 tgtaaaaatcaattctagaat 34748358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 165 - 236
Target Start/End: Original strand, 1485125 - 1485196
Alignment:
Q  165 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 236  Q
    ||||| |||| |||||| |  ||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  1485125 atttacgtttggatacacttatgtaaaagtgagttgaacaataaatttgagtgttaaaatcaattctagaat 1485196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 115 - 229
Target Start/End: Complemental strand, 882842 - 882728
Alignment:
Q  115 ttgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcga 214  Q
    |||| ||||| |||||||||||| | | ||| ||||| |||| ||| |  |||||||||| ||||||||| ||  |||||||||| ||||||||||| ||    
T  882842 ttgagtttgagtgaattgattctagttaaaattgagttgaaggtaaaatgatttatgtttggatacattcatgcaaaagtgagttaaacaataaatttga 882743  T
Q  215 gtgttaaaatcaatt 229  Q
     ||| ||||||||||    
T  882742 atgtaaaaatcaatt 882728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 128 - 236
Target Start/End: Original strand, 34027359 - 34027467
Alignment:
Q  128 aattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaa 227  Q
    |||||||| ||||| ||||||||| |||  | | ||  |||||| || |||| |||| ||| | ||||||||||| |||||||| |||||| ||||||||    
T  34027359 aattgattgtggctaaaagtgagttgaaagtgagacggtttatggttagatatattcatgtaagagtgagttgaataataaatttgagtgtaaaaatcaa 34027458  T
Q  228 ttctagaat 236  Q
    |||||||||    
T  34027459 ttctagaat 34027467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 236
Target Start/End: Original strand, 31305826 - 31305897
Alignment:
Q  165 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 236  Q
    |||||||||| |||| |||  ||| |||||||||||| ||||||||| ||||||  ||||||||||||||||    
T  31305826 atttatgtttggatatattaatgtaaaagtgagttgatcaataaatttgagtgtataaatcaattctagaat 31305897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 2234595 - 2234550
Alignment:
Q  192 agtgagttgaacaa-taaattcgagtgttaaaatcaattctagaat 236  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||    
T  2234595 agtgagttgaacaaataaatttgagtgttaaaatcaattctagaat 2234550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 232
Target Start/End: Complemental strand, 25388219 - 25388116
Alignment:
Q  128 aattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaa 227  Q
    ||||||||||| |||||| ||||| | || |||||  |||||  ||| |||| |||  ||| |||||||||||| ||||||||| |||||| ||||||||    
T  25388219 aattgattctgacttaaaatgagttggaggtaatatgatttacatttggatatatttatgtaaaagtgagttga-caataaatttgagtgtcaaaatcaa 25388121  T
Q  228 ttcta 232  Q
    |||||    
T  25388120 ttcta 25388116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 165 - 236
Target Start/End: Complemental strand, 4911014 - 4910943
Alignment:
Q  165 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 236  Q
    |||||||||| ||||||||  ||| ||||||||| |||| ||||||| |  ||| |||||||||||||||||    
T  4911014 atttatgtttggatacatttatgtaaaagtgagtcgaactataaatttgtatgtgaaaatcaattctagaat 4910943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 202
Target Start/End: Original strand, 434163 - 434253
Alignment:
Q  113 aattgattttga-ttgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaa 202  Q
    |||||||||||| |||||| |||| ||||| ||||||||| | || ||| |  |||| ||||| |||| |||||||| |||||||||||||    
T  434163 aattgattttgagttgaatggattatggctaaaagtgagttgcaggtaaaatgatttgtgtttggatatattcgtgtaaaagtgagttgaa 434253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 160
Target Start/End: Original strand, 19601372 - 19601426
Alignment:
Q  106 tgacaaaaattgattttgattgaattgattctggcttaaagtgagtcgaagataa 160  Q
    |||||||||||||||||||||||||||||| |  || | ||||||| ||||||||    
T  19601372 tgacaaaaattgattttgattgaattgattttaactaatagtgagttgaagataa 19601426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 236
Target Start/End: Original strand, 30926790 - 30926828
Alignment:
Q  198 ttgaacaataaattcgagtgttaaaatcaattctagaat 236  Q
    |||||||||||||| |||||| |||||||||||||||||    
T  30926790 ttgaacaataaatttgagtgtaaaaatcaattctagaat 30926828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 160
Target Start/End: Original strand, 34026417 - 34026459
Alignment:
Q  118 attttgattgaattgattctggcttaaagtgagtcgaagataa 160  Q
    ||||||| |||||||||||||||| ||||||||| ||||||||    
T  34026417 attttgagtgaattgattctggctaaaagtgagttgaagataa 34026459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 236
Target Start/End: Complemental strand, 852623 - 852567
Alignment:
Q  180 cattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 236  Q
    ||||| ||| |||||||||| ||||||| ||| | |||| |||||||||||||||||    
T  852623 cattcatgtaaaagtgagttaaacaatacatttgggtgtaaaaatcaattctagaat 852567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 236
Target Start/End: Complemental strand, 17225947 - 17225887
Alignment:
Q  176 gatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 236  Q
    ||||||||| ||| ||| |||||||||| ||||||| |  ||| |||||||||||||||||    
T  17225947 gatacattcatgtaaaactgagttgaactataaatttgtatgtaaaaatcaattctagaat 17225887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 104 - 219
Target Start/End: Complemental strand, 33843878 - 33843763
Alignment:
Q  104 gttgacaaaaattgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaac 203  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| | |  |||    |||||||||| |||| |||| ||| | ||||||||||||    
T  33843878 gttgacaaaaattgattttgattgaattgattctggctaaaagtgagttggatgtaaagtgatttatgtttggatatattcatgtaatagtgagttgaac 33843779  T
Q  204 aataaattcgagtgtt 219  Q
    ||||||||||||||||    
T  33843778 aataaattcgagtgtt 33843763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 165 - 236
Target Start/End: Original strand, 55927749 - 55927820
Alignment:
Q  165 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 236  Q
    |||||||||| ||||||||| ||| ||||||| |||||||||||||| |||||| |  ||||||||||||||    
T  55927749 atttatgtttggatacattcatgtaaaagtgacttgaacaataaatttgagtgtgacgatcaattctagaat 55927820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 236
Target Start/End: Complemental strand, 4243468 - 4243422
Alignment:
Q  190 aaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 236  Q
    ||||||||| |||||||||||| |||||| |||||||||||||||||    
T  4243468 aaagtgagtagaacaataaatttgagtgtaaaaatcaattctagaat 4243422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 33844052 - 33844012
Alignment:
Q  196 agttgaacaataaattcgagtgttaaaatcaattctagaat 236  Q
    |||||||||||||||| ||||||||||||||||| ||||||    
T  33844052 agttgaacaataaatttgagtgttaaaatcaattttagaat 33844012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 165 - 236
Target Start/End: Original strand, 8604601 - 8604672
Alignment:
Q  165 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 236  Q
    |||||||||| ||||||||| ||| ||||||  || ||| ||||||| | |||| |||||||||||||||||    
T  8604601 atttatgtttggatacattcatgtaaaagtgcattcaactataaatttgtgtgtgaaaatcaattctagaat 8604672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 160
Target Start/End: Original strand, 48045675 - 48045726
Alignment:
Q  109 caaaaattgattttgattgaattgattctggcttaaagtgagtcgaagataa 160  Q
    |||||||||||||||| | |||||||||||||| ||| ||||| ||||||||    
T  48045675 caaaaattgattttgagtaaattgattctggctaaaactgagttgaagataa 48045726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 236
Target Start/End: Complemental strand, 2207160 - 2207114
Alignment:
Q  190 aaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 236  Q
    |||||||||||||| ||||||| ||||||| ||||||||| ||||||    
T  2207160 aaagtgagttgaaccataaattggagtgttgaaatcaattatagaat 2207114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 236
Target Start/End: Original strand, 32818354 - 32818420
Alignment:
Q  170 tgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 236  Q
    ||||| ||||||||| ||| ||||| |||||||| ||||||| | |||  |||||||||||||||||    
T  32818354 tgtttggatacattcatgtaaaagttagttgaactataaatttgtgtgcaaaaatcaattctagaat 32818420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 166 - 211
Target Start/End: Complemental strand, 25319153 - 25319108
Alignment:
Q  166 tttatgtttcgatacattcgtgttaaagtgagttgaacaataaatt 211  Q
    ||||||||||||||||||   || ||||||||||||||||||||||    
T  25319153 tttatgtttcgatacatttacgtaaaagtgagttgaacaataaatt 25319108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 227
Target Start/End: Complemental strand, 32100373 - 32100336
Alignment:
Q  190 aaagtgagttgaacaataaattcgagtgttaaaatcaa 227  Q
    |||||||||||||||||||||| |||||| ||||||||    
T  32100373 aaagtgagttgaacaataaatttgagtgtaaaaatcaa 32100336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 236
Target Start/End: Complemental strand, 10185289 - 10185229
Alignment:
Q  176 gatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 236  Q
    ||||||||  ||| |||||||||| ||||||||||| |||||| || ||||||| ||||||    
T  10185289 gatacattaatgtaaaagtgagttaaacaataaatttgagtgtaaagatcaattttagaat 10185229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 235
Target Start/End: Complemental strand, 16552050 - 16551993
Alignment:
Q  176 gatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaa 235  Q
    ||||||||| ||| |||||||||||||| |||||||   |||| ||||||||||||||||    
T  16552050 gatacattcatgtaaaagtgagttgaactataaatt--tgtgtgaaaatcaattctagaa 16551993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 7e-24; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 104 - 236
Target Start/End: Complemental strand, 27572029 - 27571897
Alignment:
Q  104 gttgacaaaaattgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaac 203  Q
    ||||||||||||||||||||  |||||||||| ||||| |||||||||  ||| ||| |  ||||||| || ||||||||  ||| || ||||||||||     
T  27572029 gttgacaaaaattgattttgggtgaattgattatggctaaaagtgagttaaaggtaaaatgatttatggttggatacatttatgtaaatgtgagttgaat 27571930  T
Q  204 aataaattcgagtgttaaaatcaattctagaat 236  Q
    |||||| | ||||||||||||||||||||||||    
T  27571929 aataaacttgagtgttaaaatcaattctagaat 27571897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 113 - 236
Target Start/End: Complemental strand, 45557523 - 45557400
Alignment:
Q  113 aattgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaattc 212  Q
    |||||||||||| ||||||||||||| || ||||||||| |||| |||    |||| ||||| ||||||||| ||| |||||||||||| | | |||||     
T  45557523 aattgattttgaatgaattgattctgactaaaagtgagttgaaggtaaagtgatttgtgtttggatacattcatgtaaaagtgagttgagctacaaattt 45557424  T
Q  213 gagtgttaaaatcaattctagaat 236  Q
    | |||| ||||||||| |||||||    
T  45557423 gtgtgtaaaaatcaatcctagaat 45557400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 106 - 234
Target Start/End: Original strand, 40561678 - 40561806
Alignment:
Q  106 tgacaaaaattgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaa 205  Q
    |||||||| |||||||||| |||||||||||| |   ||| ||||| |||  |||    |||||||||| ||||||||| ||| ||||||||||||||||    
T  40561678 tgacaaaagttgattttgagtgaattgattctagtaaaaattgagttgaaagtaaagtgatttatgtttggatacattcatgtaaaagtgagttgaacaa 40561777  T
Q  206 taaattcgagtgttaaaatcaattctaga 234  Q
    || ||| ||||||  |||| |||||||||    
T  40561778 tatatttgagtgtataaattaattctaga 40561806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 106 - 216
Target Start/End: Original strand, 33853404 - 33853514
Alignment:
Q  106 tgacaaaaattgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaa 205  Q
    ||||||||||||||||| | |||||||||||||||| | ||||||| |||| |||    |||||||||| ||||||||| ||| ||||  || || ||||    
T  33853404 tgacaaaaattgatttttagtgaattgattctggctaagagtgagttgaagctaaagtgatttatgtttggatacattcatgtaaaagcaagctggacaa 33853503  T
Q  206 taaattcgagt 216  Q
    |||||| ||||    
T  33853504 taaatttgagt 33853514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 118 - 236
Target Start/End: Original strand, 38123598 - 38123716
Alignment:
Q  118 attttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtg 217  Q
    ||||||| | |||||||| || || ||| ||||| |||| |||   ||||| ||||  || |||||| ||| |||||||||||| ||||||||| |||||    
T  38123598 attttgagtaaattgattatgactaaaattgagttgaaggtaaagtaatttgtgttcggacacattcatgtaaaagtgagttgaccaataaatttgagtg 38123697  T
Q  218 ttaaaatcaattctagaat 236  Q
    | |||||||||||||||||    
T  38123698 taaaaatcaattctagaat 38123716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 112 - 236
Target Start/End: Original strand, 22310385 - 22310509
Alignment:
Q  112 aaattgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaatt 211  Q
    ||||||||||||| || ||||| | |||   ||| ||||| |||||||| |  |||||||||| |||||||||  || ||||||| ||||| ||||||||    
T  22310385 aaattgattttgagtggattgagtttggtaaaaattgagttgaagataaaaagatttatgtttggatacattctcgtaaaagtgaattgaaaaataaatt 22310484  T
Q  212 cgagtgttaaaatcaattctagaat 236  Q
      ||||| ||||| |||||||||||    
T  22310485 taagtgtaaaaattaattctagaat 22310509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 232
Target Start/End: Original strand, 40795969 - 40796035
Alignment:
Q  166 tttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattcta 232  Q
    |||||| || ||||||||| ||| ||||||| ||||| | |||||| ||||||||||||||||||||    
T  40795969 tttatgattggatacattcatgtaaaagtgatttgaatagtaaatttgagtgttaaaatcaattcta 40796035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 128 - 232
Target Start/End: Complemental strand, 12306866 - 12306760
Alignment:
Q  128 aattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaa--taaattcgagtgttaaaatc 225  Q
    |||||||||||||| ||||||||| ||||||||    |||||||||| | || |||| ||| ||||||||||||| |   | |||| |||||| ||||||    
T  12306866 aattgattctggctaaaagtgagttgaagataaagtgatttatgtttggctagattcatgtaaaagtgagttgaatatagtgaatttgagtgtaaaaatc 12306767  T
Q  226 aattcta 232  Q
    |||||||    
T  12306766 aattcta 12306760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 165 - 234
Target Start/End: Complemental strand, 41788422 - 41788353
Alignment:
Q  165 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctaga 234  Q
    ||||||||||  |||||||  | | |||||||||||||||  ||||| ||||||||||||||||| ||||    
T  41788422 atttatgtttgtatacattaatataaaagtgagttgaacagcaaatttgagtgttaaaatcaattataga 41788353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 106 - 135
Target Start/End: Complemental strand, 45823336 - 45823307
Alignment:
Q  106 tgacaaaaattgattttgattgaattgatt 135  Q
    ||||||||||||||||||||||||||||||    
T  45823336 tgacaaaaattgattttgattgaattgatt 45823307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 236
Target Start/End: Complemental strand, 40491721 - 40491613
Alignment:
Q  128 aattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaa 227  Q
    |||||||| || || ||||||||| |||| |||    |||||| ||| ||||||||| ||| |||||||||| |||  |||||| | |||| ||| ||||    
T  40491721 aattgattttgactaaaagtgagttgaaggtaaagtgatttatttttggatacattcatgtaaaagtgagttaaactttaaatttgtgtgtaaaagtcaa 40491622  T
Q  228 ttctagaat 236  Q
    |||||||||    
T  40491621 ttctagaat 40491613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 110 - 236
Target Start/End: Original strand, 1976788 - 1976916
Alignment:
Q  110 aaaaattgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaa 209  Q
    |||||||| |||||| ||||||||||||||||  || ||||| |||| |||  | | |||||||| ||||||||| ||| |||||||||| |||||||||    
T  1976788 aaaaattgtttttgagtgaattgattctggctagaattgagttgaaggtaaagcgacttatgtttggatacattcatgtaaaagtgagttcaacaataaa 1976887  T
Q  210 ttcgagtgt--taaaatcaattctagaat 236  Q
    || ||||||   |||||||||||||||||    
T  1976888 tttgagtgtaaaaaaatcaattctagaat 1976916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 165 - 236
Target Start/End: Complemental strand, 44439360 - 44439289
Alignment:
Q  165 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 236  Q
    |||||||||| ||||  ||  ||| |||||||||||||||||||||| ||||||||||||||||| ||||||    
T  44439360 atttatgtttggatatgtttatgtaaaagtgagttgaacaataaatttgagtgttaaaatcaattttagaat 44439289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 165 - 211
Target Start/End: Original strand, 15220840 - 15220886
Alignment:
Q  165 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaatt 211  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||    
T  15220840 atttatgtttggatacattcatgttaaagtgagttgaacaataaatt 15220886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 236
Target Start/End: Original strand, 16013683 - 16013760
Alignment:
Q  165 atttatgtttcgatacattcgtgt------taaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 236  Q
    |||||||||| |||||||||||||      ||||||||||||| ||||||||| |||||| ||||||| |||||||||    
T  16013683 atttatgtttggatacattcgtgtaaactgtaaagtgagttgaccaataaatttgagtgtaaaaatcatttctagaat 16013760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 234
Target Start/End: Original strand, 37420171 - 37420243
Alignment:
Q  164 aatttatgtttcgatacattcgt--gttaaagtgagttgaacaataaattcgagtgttaaaatcaattctaga 234  Q
    |||||||||||| ||| || |||  || ||||||||||||| |||||||| |||||| |||||||||||||||    
T  37420171 aatttatgtttcaatatatacgtaagtaaaagtgagttgaataataaatttgagtgtaaaaatcaattctaga 37420243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 135
Target Start/End: Original strand, 11650668 - 11650706
Alignment:
Q  97 gtttggcgttgacaaaaattgattttgattgaattgatt 135  Q
    |||| ||||||||||||||||||||||| ||||||||||    
T  11650668 gttttgcgttgacaaaaattgattttgagtgaattgatt 11650706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 236
Target Start/End: Complemental strand, 42741058 - 42741012
Alignment:
Q  190 aaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 236  Q
    ||||||||||| ||| |||||| |||||| |||||||||||||||||    
T  42741058 aaagtgagttggacagtaaatttgagtgtaaaaatcaattctagaat 42741012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 209
Target Start/End: Original strand, 40401621 - 40401666
Alignment:
Q  164 aatttatgtttcgatacattcgtgttaaagtgagttgaacaataaa 209  Q
    ||||||||||| ||||||||| ||| ||||| ||||||||||||||    
T  40401621 aatttatgtttggatacattcatgtaaaagtcagttgaacaataaa 40401666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 150
Target Start/End: Original strand, 3476349 - 3476393
Alignment:
Q  106 tgacaaaaattgattttgattgaattgattctggcttaaagtgag 150  Q
    ||||||||||||||||| | |||||||||||||| | ||||||||    
T  3476349 tgacaaaaattgattttaagtgaattgattctggataaaagtgag 3476393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 209
Target Start/End: Complemental strand, 4908896 - 4908852
Alignment:
Q  165 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaa 209  Q
    |||||||||| ||||||||| ||||||||||  ||||||||||||    
T  4908896 atttatgtttggatacattcatgttaaagtggattgaacaataaa 4908852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 236
Target Start/End: Complemental strand, 42982639 - 42982579
Alignment:
Q  176 gatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 236  Q
    ||||||||| ||| ||||||||||| | |||||||| | |||| |||||||||||| ||||    
T  42982639 gatacattcatgtaaaagtgagttgtaaaataaatttgtgtgtaaaaatcaattctggaat 42982579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 165 - 236
Target Start/End: Original strand, 14093 - 14164
Alignment:
Q  165 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 236  Q
    |||||||||| ||||||||| ||| ||||||||||||| |||||||| |||||| |||||||||||||||||    
T  14093 atttatgtttggatacattcatgtgaaagtgagttgaaaaataaatttgagtgtaaaaatcaattctagaat 14164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 108 - 232
Target Start/End: Complemental strand, 36302348 - 36302222
Alignment:
Q  108 acaaaaattgattttgattgaattgattctggcttaaagtgagtcgaagataataca--atttatgtttcgatacattcgtgttaaagtgagttgaacaa 205  Q
    ||||||||||||||||| ||||||||||| || | ||| ||||| |||||||| | |  ||| |||| | ||| ||||| ||| ||||||||||||||||    
T  36302348 acaaaaattgattttgagtgaattgattccggttaaaattgagttgaagataaaaaatgattaatgtgtggattcattcatgtaaaagtgagttgaacaa 36302249  T
Q  206 taaattcgagtgttaaaatcaattcta 232  Q
    ||||||  |||| ||||||||||||||    
T  36302248 taaatttaagtgctaaaatcaattcta 36302222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 111 - 236
Target Start/End: Original strand, 46853459 - 46853584
Alignment:
Q  111 aaaattgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaat 210  Q
    ||||||||| |||| |||||||||| |||||  |||| ||| |||| |||    ||||||||   |||| |||  ||| |||||||||||||||||||||    
T  46853459 aaaattgatcttgagtgaattgattttggctacaagtaagttgaaggtaaagtgatttatgtcaggatatatttatgtaaaagtgagttgaacaataaat 46853558  T
Q  211 tcgagtgttaaaatcaattctagaat 236  Q
    | ||||||||||||||||||||||||    
T  46853559 ttgagtgttaaaatcaattctagaat 46853584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 97 - 236
Target Start/End: Complemental strand, 51285744 - 51285605
Alignment:
Q  97 gtttggcgttgacaaaaattgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtga 196  Q
    |||| ||| ||| ||||||||||||||| |||||| ||| ||||| ||||||||| |||  |||   |||| ||| || ||||||||| ||| |||| |     
T  51285744 gttttgcggtgagaaaaattgattttgagtgaatttattatggctaaaagtgagttgaatgtaaagtaattcatgcttggatacattcatgtaaaagcgg 51285645  T
Q  197 gttgaacaataaattcgagtgttaaaatcaattctagaat 236  Q
    ||| ||||| ||||| |||||  |||||||||||||||||    
T  51285644 gttaaacaacaaatttgagtgcaaaaatcaattctagaat 51285605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 236
Target Start/End: Original strand, 35264392 - 35264461
Alignment:
Q  167 ttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 236  Q
    |||||||| | ||||||| ||| ||| ||| ||||||||||||||  |||||||||||||||||||||||    
T  35264392 ttatgtttgggtacattcatgtaaaaatgacttgaacaataaatttaagtgttaaaatcaattctagaat 35264461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 168 - 236
Target Start/End: Original strand, 40147832 - 40147900
Alignment:
Q  168 tatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 236  Q
    ||||||| ||||||||  ||| |||||||||||||  |||||||| |||||| ||||||||||||||||    
T  40147832 tatgtttggatacattaatgtaaaagtgagttgaatgataaattcaagtgttgaaatcaattctagaat 40147900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 258
Target Start/End: Original strand, 30301002 - 30301070
Alignment:
Q  190 aaagtgagttgaacaataaattcgagtgttaaaatcaattctagaatnnnnnnnctccaatttctagct 258  Q
    |||||| ||||||||||||||| ||||||||||| ||||||||||||       |||||||||||||||    
T  30301002 aaagtgggttgaacaataaatttgagtgttaaaaccaattctagaattaaaaaactccaatttctagct 30301070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 236
Target Start/End: Complemental strand, 35058443 - 35058396
Alignment:
Q  190 aaagtgagttgaacaataa-attcgagtgttaaaatcaattctagaat 236  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  35058443 aaagtgagttgaacaataatatttgagtgttaaaatcaattctagaat 35058396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 236
Target Start/End: Original strand, 31708223 - 31708289
Alignment:
Q  170 tgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 236  Q
    ||||| ||||||||| ||| |||||||||||||  ||||||| | |||||| |||||||||||||||    
T  31708223 tgtttggatacattcatgtaaaagtgagttgaattataaatttgtgtgttagaatcaattctagaat 31708289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 211
Target Start/End: Complemental strand, 5407061 - 5406964
Alignment:
Q  110 aaaaattgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaa 209  Q
    ||||||||||||||| |||||||||||| ||| ||| ||||| |||| ||    || |||||||| ||||||||| ||| ||||||| ||||| | ||||    
T  5407061 aaaaattgattttgagtgaattgattctagctaaaattgagttgaaggta----aagttatgtttggatacattcatgtaaaagtgatttgaagagtaaa 5406966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 165 - 236
Target Start/End: Original strand, 27266773 - 27266844
Alignment:
Q  165 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 236  Q
    |||||||||| ||||  ||| ||| ||||| |||||||||||||||| |||||| ||||| |||||| ||||    
T  27266773 atttatgtttagatattttcatgtaaaagttagttgaacaataaatttgagtgtaaaaattaattcttgaat 27266844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 236
Target Start/End: Original strand, 37335025 - 37335084
Alignment:
Q  177 atacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 236  Q
    |||||||| | | ||| ||||||||||||| ||||| ||||| |||||||||||||||||    
T  37335025 atacattcatataaaaatgagttgaacaatgaattcaagtgtaaaaatcaattctagaat 37335084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 110 - 229
Target Start/End: Original strand, 40136096 - 40136214
Alignment:
Q  110 aaaaattgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaa 209  Q
    ||||||||||||||| |||||| |||||||| |||||||| | |||  ||| | | ||| |||||  |||||||  ||| ||| |||||| |||||| ||    
T  40136096 aaaaattgattttgaatgaattaattctggc-taaagtgacttgaatgtaaaatattttttgttttaatacatttttgtaaaaatgagttcaacaatgaa 40136194  T
Q  210 ttcgagtgttaaaatcaatt 229  Q
    || || ||||||||||||||    
T  40136195 tttgattgttaaaatcaatt 40136214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 236
Target Start/End: Complemental strand, 3776667 - 3776557
Alignment:
Q  126 tgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatc 225  Q
    |||||||||||||||| ||| ||||| |||  |||    ||||||| || ||||||||  ||| |||||||||| | ||| ||||| |||||| |||||     
T  3776667 tgaattgattctggctaaaattgagttgaatgtaaagtgatttatgcttggatacattgatgtaaaagtgagttcagcaacaaatttgagtgtaaaaatt 3776568  T
Q  226 aattctagaat 236  Q
    |||||||||||    
T  3776567 aattctagaat 3776557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 235
Target Start/End: Original strand, 35253446 - 35253516
Alignment:
Q  165 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaa 235  Q
    |||||| ||| || ||| || ||| |||||||||||||  ||||||| |||||| ||||||||||||||||    
T  35253446 atttatatttggaaacaatcatgtaaaagtgagttgaatgataaatttgagtgtaaaaatcaattctagaa 35253516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 165 - 226
Target Start/End: Original strand, 29475364 - 29475425
Alignment:
Q  165 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatca 226  Q
    |||||||||| ||||| ||  ||| ||| |||||||||||| ||||| ||||||||||||||    
T  29475364 atttatgttttgatacgtttatgtcaaactgagttgaacaaaaaatttgagtgttaaaatca 29475425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 111 - 226
Target Start/End: Complemental strand, 1233465 - 1233350
Alignment:
Q  111 aaaattgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaat 210  Q
    |||||||||||| |||||||| ||| | | | ||  |||||  ||| ||| | ||||||||||| ||||||||| ||| |||||||||| ||||||||||    
T  1233465 aaaattgattttcattgaattaattttagttaaacatgagtttaaggtaaaataatttatgtttagatacattcatgtgaaagtgagttcaacaataaat 1233366  T
Q  211 tcgagtgttaaaatca 226  Q
    | |||||| |||||||    
T  1233365 ttgagtgtaaaaatca 1233350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 165 - 236
Target Start/End: Original strand, 48548993 - 48549062
Alignment:
Q  165 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 236  Q
    |||||||||| ||||||||  ||| |||||||||||||||||||||  |||| | |||||||||||||||||    
T  48548993 atttatgttttgatacatttatgtaaaagtgagttgaacaataaat--gagtttaaaaatcaattctagaat 48549062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 232
Target Start/End: Original strand, 28287340 - 28287382
Alignment:
Q  190 aaagtgagttgaacaataaattcgagtgttaaaatcaattcta 232  Q
    ||||| |||||||||||||||| ||||||||||||||||||||    
T  28287340 aaagttagttgaacaataaatttgagtgttaaaatcaattcta 28287382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 236
Target Start/End: Original strand, 213522 - 213587
Alignment:
Q  171 gtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 236  Q
    |||| ||| ||||| ||| |||||||||||||||| ||||| |||| | |||||||||||||||||    
T  213522 gtttggatgcattcatgtaaaagtgagttgaacaacaaatttgagtttaaaaatcaattctagaat 213587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 1514450 - 1514385
Alignment:
Q  164 aatttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaatt 229  Q
    ||||| ||||| ||||||||| ||| ||| |||||||||||||||||| | |||| ||||||||||    
T  1514450 aatttgtgtttggatacattcatgtaaaaatgagttgaacaataaatttgtgtgtaaaaatcaatt 1514385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 106 - 207
Target Start/End: Original strand, 6932104 - 6932205
Alignment:
Q  106 tgacaaaaattgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaa 205  Q
    |||||||| |||||||||| ||||||||||||| || ||||||||| |||  ||| |  || |  |||| ||| ||||||||| || |||||||||||||    
T  6932104 tgacaaaatttgattttgaatgaattgattctgactaaaagtgagttgaatgtaaaatgatcttcgtttggattcattcgtgtaaaggtgagttgaacaa 6932203  T
Q  206 ta 207  Q
    ||    
T  6932204 ta 6932205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 234
Target Start/End: Original strand, 20026168 - 20026212
Alignment:
Q  190 aaagtgagttgaacaataaattcgagtgttaaaatcaattctaga 234  Q
    ||||||| |||||||||||||| ||||||| ||||||||||||||    
T  20026168 aaagtgaattgaacaataaatttgagtgttcaaatcaattctaga 20026212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 234
Target Start/End: Complemental strand, 24587993 - 24587949
Alignment:
Q  190 aaagtgagttgaacaataaattcgagtgttaaaatcaattctaga 234  Q
    ||||||||||||| |||||||| ||||||||||||||||| ||||    
T  24587993 aaagtgagttgaataataaatttgagtgttaaaatcaattataga 24587949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 52263625 - 52263689
Alignment:
Q  164 aatttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaat 228  Q
    ||||||||||| ||||||||  ||| ||| |||||| ||||||||||| |||||| |||||||||    
T  52263625 aatttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaat 52263689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 165 - 236
Target Start/End: Complemental strand, 4458492 - 4458421
Alignment:
Q  165 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 236  Q
    |||||| ||| |||||||||  || ||||||| ||| ||||||||||| |||||||||  ||||||||||||    
T  4458492 atttatatttggatacattcaggtaaaagtgaattgtacaataaattcaagtgttaaatccaattctagaat 4458421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 165 - 236
Target Start/End: Complemental strand, 34915172 - 34915101
Alignment:
Q  165 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 236  Q
    ||||||||||  |||||||| ||| |||||||||||||  ||||| | | |||||| |||||||||||||||    
T  34915172 atttatgtttgaatacattcatgtaaaagtgagttgaattataaaatggtgtgttagaatcaattctagaat 34915101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 236
Target Start/End: Original strand, 7790646 - 7790692
Alignment:
Q  190 aaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 236  Q
    |||||||||||||||||||||| | |||| |||||||||| ||||||    
T  7790646 aaagtgagttgaacaataaatttgtgtgtaaaaatcaattatagaat 7790692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 235
Target Start/End: Complemental strand, 8382047 - 8382002
Alignment:
Q  190 aaagtgagttgaacaataaattcgagtgttaaaatcaattctagaa 235  Q
    |||||||||||||||||||| | || ||| ||||||||||||||||    
T  8382047 aaagtgagttgaacaataaacttgaatgtaaaaatcaattctagaa 8382002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 191 - 236
Target Start/End: Original strand, 47892393 - 47892438
Alignment:
Q  191 aagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 236  Q
    |||||||||||||||||  ||  |||||||||||||||||||||||    
T  47892393 aagtgagttgaacaatatgttttagtgttaaaatcaattctagaat 47892438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 236
Target Start/End: Complemental strand, 3016265 - 3016197
Alignment:
Q  168 tatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 236  Q
    ||||||| ||||||||| ||| ||||||||||||||  ||||||   |||| || ||||||||||||||    
T  3016265 tatgtttggatacattcatgtaaaagtgagttgaaccgtaaatttatgtgtaaacatcaattctagaat 3016197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 236
Target Start/End: Original strand, 10324928 - 10324988
Alignment:
Q  176 gatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 236  Q
    ||||||||  ||| |||||||||  ||||||||||| |||||| |||||||||| ||||||    
T  10324928 gatacattaatgtaaaagtgagtataacaataaatttgagtgtaaaaatcaattatagaat 10324988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 17284171 - 17284131
Alignment:
Q  196 agttgaacaataaattcgagtgttaaaatcaattctagaat 236  Q
    |||||||||||||||| |||||| |||||||||| ||||||    
T  17284171 agttgaacaataaatttgagtgtaaaaatcaattttagaat 17284131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 236
Target Start/End: Complemental strand, 30557608 - 30557539
Alignment:
Q  165 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 236  Q
    |||| ||||| ||||||||| | | |||||||||||||| |||||||   |||| |||||||||||||||||    
T  30557608 atttgtgtttggatacattcatataaaagtgagttgaactataaatt--tgtgtgaaaatcaattctagaat 30557539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 232
Target Start/End: Original strand, 30850393 - 30850445
Alignment:
Q  180 cattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattcta 232  Q
    ||||| ||| |||||||||||||| ||||||| |  |||||||||||||||||    
T  30850393 cattcatgtaaaagtgagttgaactataaatttgtatgttaaaatcaattcta 30850445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 202
Target Start/End: Complemental strand, 35961501 - 35961437
Alignment:
Q  138 ggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaa 202  Q
    |||| ||||||||| |||| ||| |  ||||||||||| |||||||| ||| |||||||||||||    
T  35961501 ggctaaaagtgagttgaaggtaaaatgatttatgtttctatacattcatgtaaaagtgagttgaa 35961437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 233
Target Start/End: Original strand, 52339719 - 52339775
Alignment:
Q  177 atacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctag 233  Q
    |||||||||||| || |||| |||||||||||||| |||| | ||| ||||||||||    
T  52339719 atacattcgtgtaaatgtgacttgaacaataaatttgagtataaaactcaattctag 52339775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 232
Target Start/End: Original strand, 16972005 - 16972110
Alignment:
Q  127 gaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatca 226  Q
    |||||||||| | || ||||||||| |||| ||| |  |||| |||||  |||||||| ||| ||||||| |||||||||||||| | || | |||||||    
T  16972005 gaattgattcagactaaaagtgagttgaaggtaaaatgatttgtgtttgaatacattcatgtaaaagtgatttgaacaataaatttgtgtttaaaaatca 16972104  T
Q  227 attcta 232  Q
    ||||||    
T  16972105 attcta 16972110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 165 - 232
Target Start/End: Complemental strand, 32927998 - 32927931
Alignment:
Q  165 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattcta 232  Q
    |||| ||||| ||||||||| ||| |||||||||||||| ||||||| | |||| ||||| |||||||    
T  32927998 atttgtgtttggatacattcatgtaaaagtgagttgaactataaatttgtgtgtaaaaatgaattcta 32927931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 165 - 236
Target Start/End: Complemental strand, 35495366 - 35495295
Alignment:
Q  165 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 236  Q
    |||||||||| |||||||||   | ||||||| |||||||||||||| |||| | |||||||||| ||||||    
T  35495366 atttatgtttggatacattcaaataaaagtgatttgaacaataaatttgagtataaaaatcaattatagaat 35495295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 236
Target Start/End: Original strand, 13384658 - 13384704
Alignment:
Q  190 aaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 236  Q
    |||||||||||||| ||||||| | |||| |||||||||||||||||    
T  13384658 aaagtgagttgaactataaatttgtgtgtgaaaatcaattctagaat 13384704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 236
Target Start/End: Complemental strand, 32767495 - 32767422
Alignment:
Q  165 atttatgtttcgatacattc--gtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 236  Q
    |||||||||| |||||||||  |||| ||||||||||||||||||||||  ||||| ||| ||| |||| ||||    
T  32767495 atttatgtttggatacattcatgtgtaaaagtgagttgaacaataaatttaagtgtaaaagtcagttctcgaat 32767422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 157
Target Start/End: Complemental strand, 38386476 - 38386430
Alignment:
Q  111 aaaattgattttgattgaattgattctggcttaaagtgagtcgaaga 157  Q
    ||||||||||||||| ||||||||||||||| ||||| ||| |||||    
T  38386476 aaaattgattttgatagaattgattctggctaaaagtaagttgaaga 38386430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 207
Target Start/End: Complemental strand, 2778677 - 2778577
Alignment:
Q  107 gacaaaaattgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaat 206  Q
    ||||||||||||||||   |||| ||||||| ||| ||||||||| ||||||||    |||||| ||| |||| |||  ||  |||||||||||||||||    
T  2778677 gacaaaaattgattttatgtgaactgattctagctaaaagtgagttgaagataaagtgatttatttttggataaatttatgcaaaagtgagttgaacaat 2778578  T
Q  207 a 207  Q
    |    
T  2778577 a 2778577  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 236
Target Start/End: Original strand, 26100088 - 26100196
Alignment:
Q  128 aattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaa 227  Q
    ||||||||||| || |||  |||| |||| |||  | |||| ||||| ||| ||||  ||| |||||||||||||| ||||||| | |||| ||||||||    
T  26100088 aattgattctgactaaaaacgagttgaaggtaaagctatttgtgtttggatgcatttatgtaaaagtgagttgaaccataaatttgtgtgtaaaaatcaa 26100187  T
Q  228 ttctagaat 236  Q
    || ||||||    
T  26100188 ttatagaat 26100196  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 134
Target Start/End: Complemental strand, 43024991 - 43024963
Alignment:
Q  106 tgacaaaaattgattttgattgaattgat 134  Q
    |||||||||||||||||||||||||||||    
T  43024991 tgacaaaaattgattttgattgaattgat 43024963  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 236
Target Start/End: Complemental strand, 15368632 - 15368508
Alignment:
Q  111 aaaattgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaat 210  Q
    |||||||||||||| |||||||||||||||| ||| ||||| ||||  ||    ||||||||||  |||||| | ||| ||||||| |||||||| | ||    
T  15368632 aaaattgattttgagtgaattgattctggctgaaattgagttgaagggaa-gtgatttatgtttgaatacatccatgtaaaagtgacttgaacaacatat 15368534  T
Q  211 tcgagtgttaaaatcaattctagaat 236  Q
    | |||||| || ||||||| ||||||    
T  15368533 ttgagtgtaaagatcaattatagaat 15368508  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 233
Target Start/End: Complemental strand, 8591587 - 8591519
Alignment:
Q  165 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctag 233  Q
    |||||| ||| ||||||||| | | |||||||||||||||| ||||| |||||  ||||||||||||||    
T  8591587 atttatatttggatacattcctataaaagtgagttgaacaacaaatttgagtgaaaaaatcaattctag 8591519  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 130 - 217
Target Start/End: Original strand, 35138967 - 35139054
Alignment:
Q  130 ttgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtg 217  Q
    ||||||||| || ||| ||||| |||| ||| |  |||||||||  ||||||||| | | |||||||||||||||||||||| |||||    
T  35138967 ttgattctgtctaaaattgagttgaaggtaaaatgatttatgttcagatacattcatatgaaagtgagttgaacaataaatttgagtg 35139054  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 236
Target Start/End: Complemental strand, 36640042 - 36639972
Alignment:
Q  166 tttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 236  Q
    ||||||||| ||||  ||| ||| |||||||| |||||| |||||| |||||| |||| ||||||||||||    
T  36640042 tttatgttttgataggttcatgtaaaagtgaggtgaacattaaatttgagtgtaaaaaacaattctagaat 36639972  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 226
Target Start/End: Complemental strand, 7925468 - 7925431
Alignment:
Q  189 taaagtgagttgaacaataaattcgagtgttaaaatca 226  Q
    ||||||||||||||||||||||| |||||| |||||||    
T  7925468 taaagtgagttgaacaataaatttgagtgtaaaaatca 7925431  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 106 - 151
Target Start/End: Original strand, 9952555 - 9952600
Alignment:
Q  106 tgacaaaaattgattttgattgaattgattctggcttaaagtgagt 151  Q
    ||||||||||||||||||| |||||||||| ||| | |||||||||    
T  9952555 tgacaaaaattgattttgaatgaattgattatggataaaagtgagt 9952600  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 235
Target Start/End: Original strand, 9185020 - 9185064
Alignment:
Q  191 aagtgagttgaacaataaattcgagtgttaaaatcaattctagaa 235  Q
    ||||||||||||| |||||||  | ||||||||||||||||||||    
T  9185020 aagtgagttgaacgataaatttaaatgttaaaatcaattctagaa 9185064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 37886019 - 37886063
Alignment:
Q  167 ttatgtttcgatacattcgtgttaaagtgagttgaacaataaatt 211  Q
    ||||||||  ||||||| |||| ||||||||||||||||||||||    
T  37886019 ttatgtttgaatacatttgtgtaaaagtgagttgaacaataaatt 37886063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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