View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14038_high_34 (Length: 272)

Name: NF14038_high_34
Description: NF14038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14038_high_34
NF14038_high_34
[»] chr3 (1 HSPs)
chr3 (5-258)||(31221064-31221317)
[»] chr8 (1 HSPs)
chr8 (124-224)||(33714252-33714352)
[»] chr5 (1 HSPs)
chr5 (79-224)||(14295459-14295605)
[»] chr7 (1 HSPs)
chr7 (85-142)||(19719042-19719099)
[»] chr6 (1 HSPs)
chr6 (142-179)||(2514701-2514738)
[»] chr2 (1 HSPs)
chr2 (113-190)||(680491-680568)
[»] chr1 (2 HSPs)
chr1 (160-240)||(33527199-33527280)
chr1 (123-179)||(25479580-25479636)
[»] chr4 (1 HSPs)
chr4 (83-137)||(35064896-35064947)


Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 5 - 258
Target Start/End: Complemental strand, 31221317 - 31221064
Alignment:
Q  5 tgtccaagaatatggttaagtgggtatagaggaatataaagttgtttgaagtgagttatttgagcttatgaaattgtctgagagaacttatgataacaac 104  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31221317 tgtccaagaaaagggttaagtgggtatagaggaatataaagttgtttgaagtgagttatttgagcttatgaaattgtctgagagaacttatgataacaac 31221218  T
Q  105 ttatattgtgtttataaattgttttcagcttatctttaaaaggtctcaaggacagcttatgaaaataacttatagattacacgaaacagttcgactgtac 204  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  31221217 ttatattgtgttcataaattgttttcagcttatctttaaaaggtctcaaggacagcttatgaaaataacttataaattacacgaaacagttcgactgtac 31221118  T
Q  205 ttcatcttctgttatagaaagagtttattcataagctcaaattaagttgtttat 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31221117 ttcatcttctgttatagaaagagtttattcataagctcaaattaagttgtttat 31221064  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 224
Target Start/End: Original strand, 33714252 - 33714352
Alignment:
Q  124 tgttttcagcttatctttaaaaggtctcaaggacagcttatgaaaataacttatagattacacgaaacagttcgactgtacttcatcttctgttatagaa 223  Q
    |||||||||||||| |||| ||| ||||   || |||||||||||||| ||||||||||  || ||| |||| |||| || || ||||| ||||||||||    
T  33714252 tgttttcagcttatttttataagctctcccagatagcttatgaaaatagcttatagattgtacaaaatagtttgactttattttatcttgtgttatagaa 33714351  T
Q  224 a 224  Q
    |    
T  33714352 a 33714352  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 224
Target Start/End: Complemental strand, 14295605 - 14295459
Alignment:
Q  79 tgtctgagagaacttatgataacaacttatattgtgtttataaattgttttcagcttatctttaaaaggtctcaaggacagcttatgaaaataacttata 178  Q
    ||||||||||| ||||||| |||| |||||  | |||  ||||  |||||||||||||  | |||||| |||| |||| |||||| ||||| | ||||||    
T  14295605 tgtctgagagagcttatgaaaacagcttatgatatgtcgataagctgttttcagcttacttctaaaagctctccaggatagcttacgaaaacagcttata 14295506  T
Q  179 gattacacg-aaacagttcgactgtacttcatcttctgttatagaaa 224  Q
    | ||| | | |||||||| |||| || || ||||| |||||||||||    
T  14295505 gcttatatgaaaacagtttgactttattttatcttttgttatagaaa 14295459  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 142
Target Start/End: Complemental strand, 19719099 - 19719042
Alignment:
Q  85 agagaacttatgataacaacttatattgtgtttataaattgttttcagcttatcttta 142  Q
    ||||||||||||| ||||||||||    |||| ||||| |||||||||||||||||||    
T  19719099 agagaacttatgaaaacaacttatgacatgttcataaactgttttcagcttatcttta 19719042  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 179
Target Start/End: Complemental strand, 2514738 - 2514701
Alignment:
Q  142 aaaaggtctcaaggacagcttatgaaaataacttatag 179  Q
    ||||| |||| |||||||||||||||||||||||||||    
T  2514738 aaaagatctccaggacagcttatgaaaataacttatag 2514701  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 113 - 190
Target Start/End: Complemental strand, 680568 - 680491
Alignment:
Q  113 tgtttataaattgttttcagcttatctttaaaaggtctcaaggacagcttatgaaaataacttatagattacacgaaa 190  Q
    |||||||||| |||||||||||||| || | ||| |||  | || |||||||||||||| ||||||| ||| ||||||    
T  680568 tgtttataaactgttttcagcttattttcacaagttcttcaagatagcttatgaaaatagcttatagcttatacgaaa 680491  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 240
Target Start/End: Original strand, 33527199 - 33527280
Alignment:
Q  160 cttatgaaaataacttatagattacacgaaa-cagttcgactgtacttcatcttctgttatagaaagagtttattcataagc 240  Q
    |||||||||| | ||||||||||| | |||| ||||| ||||||| || ||||| |||| |||||| || ||||||||||||    
T  33527199 cttatgaaaacagcttatagattatatgaaaacagtttgactgtattttatcttttgttttagaaatagcttattcataagc 33527280  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 179
Target Start/End: Complemental strand, 25479636 - 25479580
Alignment:
Q  123 ttgttttcagcttatctttaaaaggtctcaaggacagcttatgaaaataacttatag 179  Q
    ||||||||||||||| || | ||| |||| |||| |||||||||||| |||||||||    
T  25479636 ttgttttcagcttattttcataagctctctaggatagcttatgaaaacaacttatag 25479580  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 137
Target Start/End: Complemental strand, 35064947 - 35064896
Alignment:
Q  83 tgagagaacttatgataacaacttatattgtgtttataaattgttttcagcttat 137  Q
    ||||||||||||||| |||||| || ||   ||||||||||||||||||||||||    
T  35064947 tgagagaacttatgaaaacaacctacat---gtttataaattgttttcagcttat 35064896  T

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