View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14038_high_7 (Length: 545)
Name: NF14038_high_7
Description: NF14038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14038_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 412; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 18 - 513
Target Start/End: Complemental strand, 34747153 - 34746657
Alignment:
| Q |
18 |
ccatcacactttctacctttgtttgtctttcatcccttgcagtcctggatttgtactgcatcataattagttgcggctcttctagtgactccaaaacgtt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||| ||||||||| ||||||||||||||| |
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| T |
34747153 |
ccatcacactttctacctttgtttgtctttcatcccttgcagtcctgaacttgtattgcatcataattagttgcagctcttctaatgactccaaaacgtt |
34747054 |
T |
|
| Q |
118 |
gacacttaatttcccagttcttagaaagtttgtgacatttggttgcatttggtcaggtgtgaagagtgccactttacaagtacctttgcttgaagtagtt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||| |||||||||||||| |
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| T |
34747053 |
gacacttaatttcccagttcttagaaagtttgtgacatttggttgcattttgtcaggtgtgaagagtgtcattttacaagtacctctgcttgaagtagtt |
34746954 |
T |
|
| Q |
218 |
tcaataagctatcatcccttctatcgcacgtcgcatgctgaaattaagttttatgcttcgcacattgcaacattttgttattatggtcatatgtcagata |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
34746953 |
tcaataagctatcatcccttctatcgcacgtcgcatgctgaaattaagttttatgcttcgcgcattgcaacattttgttattatggtcatatgtcagata |
34746854 |
T |
|
| Q |
318 |
caattttgtttgaggcacacagtgtagcatctgccgatattactctatataataagaacaagaagagtccgcaagaaattgggatttttgtttgtaaact |
417 |
Q |
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| T |
34746853 |
caattttgtttgagggacatagtgtagcatctgctgatattactttatataataagaacaagaagagtccgcaagaaattgggatttttgtttgtaaact |
34746754 |
T |
|
| Q |
418 |
tctcagtattaatccagaatgtctaaagctgtctgtacatggttgcatttcgcaggtatg-nnnnnnnacttttcttgcttcactatgtttgtgcat |
513 |
Q |
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| T |
34746753 |
tctcagtattaatccagaatgtctaaagctgtctgtacatggttgcatttcgcaggtatgttttttttacttttcttgcttcactatgtttgtgcat |
34746657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 21 - 445
Target Start/End: Complemental strand, 34751760 - 34751336
Alignment:
| Q |
21 |
tcacactttctacctttgtttgtctttcatcccttgcagtcctggatttgtactgcatcataattagttgcggctcttctagtgactccaaaacgttgac |
120 |
Q |
| |
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|||||||| ||| |||||||||||||||||||||| || ||||| | |||| | |||| ||||| ||| | |||||||| ||| |||||||||||| | |
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| T |
34751760 |
tcacacttcctagctttgtttgtctttcatcccttacaatcctgaagttgtctagaatcacaattacttgtgactcttctaatgagtccaaaacgttggc |
34751661 |
T |
|
| Q |
121 |
acttaatttcccagttcttagaaagtttgtgacatttggttgcatttggtcagg-tgtgaagagtgccactttacaagtacctttgcttgaagtagtttc |
219 |
Q |
| |
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| T |
34751660 |
gcttaatttcccagctcttagaaagtatgagacattagattgcacttt-tctgaatgtgaagagtgtcactttacaagtgcctctccttgaagttgtttc |
34751562 |
T |
|
| Q |
220 |
aataagctatcatcccttctatcgcacgtcgcatgctgaaattaagttttatgcttcgcacattgcaacattttgttattatggtcatatgtcagataca |
319 |
Q |
| |
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| T |
34751561 |
aataagctatgatcccttctatcacaaatcacattgtgaaattaagttttatgctacgcgccttgcaaaattctgttattctggttatatgtcagataca |
34751462 |
T |
|
| Q |
320 |
attttgtttgaggcacacagtgtagcatctgccgatattactctatataataagaacaagaagagtccgcaagaaattgggatttttgtttgtaaacttc |
419 |
Q |
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|||||||| |||||||| |||||||||| ||| |||||| |||||||| || | || ||||||||| |||||||||||||||||||||||||||||||| |
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| T |
34751461 |
attttgttagaggcacatagtgtagcatttgctgatattgctctatatgatgataatgagaagagtctgcaagaaattgggatttttgtttgtaaacttc |
34751362 |
T |
|
| Q |
420 |
tcagtattaatccagaatgtctaaag |
445 |
Q |
| |
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| ||||||||||||||| |||||||| |
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| T |
34751361 |
ttagtattaatccagaaagtctaaag |
34751336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 109 - 448
Target Start/End: Complemental strand, 34759499 - 34759163
Alignment:
| Q |
109 |
caaaacgttgacacttaatttcccagttcttagaaagtttgtgacatttggttgcatttggtcaggtgtgaagagtgccactttacaagtacctttgctt |
208 |
Q |
| |
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|||||| ||| ||||||||||||||| ||||||| | | || |||||| | ||||| || ||| ||||||||||| || ||||||||| ||| ||| |
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| T |
34759499 |
caaaactttggcacttaatttcccagctcttagacattatgagacattagattgcactttttcacatgtgaagagtgtcaatttacaagtgcct---ctt |
34759403 |
T |
|
| Q |
209 |
gaagtagtttcaataagctatcatcccttctatcgcacgtcgcatgctgaaattaagttttatgcttcgcacattgcaacattttgttattatggtcata |
308 |
Q |
| |
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||||| ||||||||||| ||| || |||||||| ||| | |||||||||||||||||||||| || || | ||||| ||||||||||| ||| ||| |
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| T |
34759402 |
gaagttgtttcaataagatattctcgcttctatcacactttgcatgctgaaattaagttttatactatgcgccctgcaaaattttgttattctggctata |
34759303 |
T |
|
| Q |
309 |
tgtcagatacaattttgtttgaggcacacagtgtagcatctgccgatattactctatataataagaacaagaagagtccgcaagaaattgggatttttgt |
408 |
Q |
| |
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||||||||||||||||||| |||||||| ||||||| || ||| |||||| || ||||| || | || |||| |||| || |||||||||||||||| |
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| T |
34759302 |
tgtcagatacaattttgttagaggcacatagtgtaggatttgctgatattgctttatatgatgatcacgagaatagtcttaaaaaaattgggatttttgt |
34759203 |
T |
|
| Q |
409 |
ttgtaaacttctcagtattaatccagaatgtctaaagctg |
448 |
Q |
| |
|
| |||||||||| | |||||||||||| |||||||||| |
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| T |
34759202 |
tactaaacttctctgcattaatccagaaactctaaagctg |
34759163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 24 - 224
Target Start/End: Complemental strand, 34742580 - 34742380
Alignment:
| Q |
24 |
cactttctacctttgtttgtctttcatcccttgcagtcctggatttgtactgcatcataattagttgcggctcttctagtgactccaaaacgttgacact |
123 |
Q |
| |
|
||||| ||| ||| |||||| ||||||||||| || ||||| | |||| | |||| ||||| ||| | |||||||| | | |||||||| ||| |||| |
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| T |
34742580 |
cacttcctagcttagtttgtttttcatcccttacaatcctgaagttgtctagaatcacaattacttgtgactcttctaataagtccaaaactttggcact |
34742481 |
T |
|
| Q |
124 |
taatttcccagttcttagaaagtttgtgacatttggttgcatttggtcaggtgtgaagagtgccactttacaagtacctttgcttgaagtagtttcaata |
223 |
Q |
| |
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||||||||||| ||||||||| || |||||| | ||||| ||||||||||||||| |||| |||||| ||| ||| | ||| |||| ||||||||| |
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| T |
34742480 |
taatttcccagcaattagaaagtatgagacattggattgcacttggtcaggtgtgaatagtgttactttaagagtgcctctactttaagtggtttcaata |
34742381 |
T |
|
| Q |
224 |
a |
224 |
Q |
| |
|
| |
|
|
| T |
34742380 |
a |
34742380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 121 - 193
Target Start/End: Complemental strand, 37419961 - 37419889
Alignment:
| Q |
121 |
acttaatttcccagttcttagaaagtttgtgacatttggttgcatttggtcaggtgtgaagagtgccacttta |
193 |
Q |
| |
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||||||||||||| |||||||| ||| ||||||| || ||||| |||||||||||| ||| ||| ||||||| |
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| T |
37419961 |
acttaatttcccaattcttagagagtatgtgacaaatgcttgcacttggtcaggtgtaaagtgtgtcacttta |
37419889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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