View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14038_high_9 (Length: 463)
Name: NF14038_high_9
Description: NF14038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14038_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 16 - 287
Target Start/End: Original strand, 600223 - 600502
Alignment:
| Q |
16 |
caaatctcttacgaattggatcaattaattgttggtgtttggttttgttatatatatttttggatagatagacgaaatgacaatagttattgaaaattca |
115 |
Q |
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| T |
600223 |
caaatctcttacgaattggatcaattaattgttggtgtttggttttgttatatatatttttggatagatagacgaaatgataatagttattgaaaattca |
600322 |
T |
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| Q |
116 |
tacacacaagtagatgagttagaactcgaacatcggtcacgttgttcagcttaacaagatcgacatttttgtccgttgaactaa--------gacttgtg |
207 |
Q |
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| T |
600323 |
tacacacaagtagatgagttagaactcgaacatcggtcacattgttcagcttaacaaaatcgacatttttgtccgttgaactaagacttgtggacttgtg |
600422 |
T |
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| Q |
208 |
gtttgctttaacatgtttttgttttgatttgttggtgaaatgacttgaagttgattatcaattttttagtcattaaattc |
287 |
Q |
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| T |
600423 |
gtttgctttaacatgtttttgttttgatttgttggtgaaatgacttgaagttgattatcaattttttagtcattaaattc |
600502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 396 - 455
Target Start/End: Original strand, 600624 - 600683
Alignment:
| Q |
396 |
gttaagtgtgtttgatttgttgggtcaaactaatgaattgagatttagatattgatgatg |
455 |
Q |
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| T |
600624 |
gttaattgtgtttgatttgttgggtcaaactaatgaattgagatttagatattgatgatg |
600683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 83 - 134
Target Start/End: Original strand, 12119474 - 12119525
Alignment:
| Q |
83 |
atagacgaaatgacaatagttattgaaaattcatacacacaagtagatgagt |
134 |
Q |
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| T |
12119474 |
atagatgaaatgataatagttattgaaaactcatacacacaagtagaagagt |
12119525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 126
Target Start/End: Complemental strand, 31507911 - 31507865
Alignment:
| Q |
80 |
tagatagacgaaatgacaatagttattgaaaattcatacacacaagt |
126 |
Q |
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| T |
31507911 |
tagatagatgaaatgacaatagtcattggaaattcagacacacaagt |
31507865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 126
Target Start/End: Complemental strand, 14817563 - 14817509
Alignment:
| Q |
70 |
tatttttggatagatagacgaaatgacaatagttattgaaaattcatacacacaagt |
126 |
Q |
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| T |
14817563 |
tatttttgg-tagatagacgaaatgacaa-agtcattgtaaactcatacacacaagt |
14817509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 126
Target Start/End: Complemental strand, 15264559 - 15264505
Alignment:
| Q |
70 |
tatttttggatagatagacgaaatgacaatagttattgaaaattcatacacacaagt |
126 |
Q |
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| T |
15264559 |
tatttttgg-tagatagacgaaatgacaa-agtcattgtaaactcatacacacaagt |
15264505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 121
Target Start/End: Original strand, 14429286 - 14429353
Alignment:
| Q |
53 |
tttggttttgttatatatatttttggatagatagacgaaatgacaatagttattgaaaattcatacaca |
121 |
Q |
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| T |
14429286 |
tttggttttttattatatttttttgg-tatatagacgaaaagacaatagttattgaaaactcgtacaca |
14429353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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