View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14038_low_1 (Length: 883)
Name: NF14038_low_1
Description: NF14038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14038_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 461; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 1 - 494
Target Start/End: Complemental strand, 32261491 - 32260998
Alignment:
| Q |
1 |
caaagacacataagggactttcttgaattgggttgcaaatttccactagggcagtcatgccacgaacgtttccttcactatgtaaacaagtaacaatgcg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32261491 |
caaagacacataagggactttcttgaattgggttgcaaatttccactagggcagtcatgccacgaacgtttccttcactatgtaaacaagtaacaatgcg |
32261392 |
T |
|
| Q |
101 |
aaactctgaatttcttggagtgttttggattgttctcatttcttcatcaaatatgcttgatgaacttaagactcgaggacgatgcttgtataacaattta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
32261391 |
aaactctgaatttcttggagtgttttggattgttctcatttcttcatcaaatatgcttgatgaacttaatactcgaggacgatgcttgtataacaattta |
32261292 |
T |
|
| Q |
201 |
atgaggggtatgatgattgcagttgtaaccaccacacctatcatcaagtgactcaatgtttcatcatccattagctacaaacataaagttaatttgttag |
300 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32261291 |
atgaggggtgtgatgattgcagttgtaaccaccacacctatcatcaagtgactcaatgtttcatcatccattagctacaaacataaagttaatttgttag |
32261192 |
T |
|
| Q |
301 |
tttgttgtgtaaaactataaaatacaaatagggtcaaaggtaaaattaaagacaacatatacatagtttggggttggataactcaattgatagctaaagg |
400 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32261191 |
tttgttgtgtaaaactataaaatacaaataggatcaaaggtaaaattaaagacaacatatacatagtttggggttggataactcaattgatagctaaagg |
32261092 |
T |
|
| Q |
401 |
attaaaaagagtttaagagttaaaggttcagggttcaagtcttgcnnnnnnngaatactaatatacaaacaattaacatactaacatttattcc |
494 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
32261091 |
attaaaaagagtttaagagttaaaggttcagggttcaagtcttgcaaaaaaagaatactaatatacaaacaattaacatactaacatttattcc |
32260998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 496 - 866
Target Start/End: Complemental strand, 32260953 - 32260583
Alignment:
| Q |
496 |
acgatggatccaatatgtgatatataagattaattaagtatttaaactattgcgtaccttgatttggtgcaatttaataaaggttataaggtgaggtatg |
595 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32260953 |
acgatggattcaatatgtgatatataagattaattaagtatttaaactattgcgtaccttgatttggtgcaatttaataaaggttataaggtgaggtatg |
32260854 |
T |
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| Q |
596 |
cccttgatgttcaacatgaggccaagcactgtgccatgtttgggcttgatgttatatatcatagaaaccaacacacaagcaaccacctttgctatgtctc |
695 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32260853 |
cccttgatgttcaacatgaggccaagcactgtgccatgtttgggcttgatgttatatatcatagaaaccaacacacaagcaaccacctttgctatgtctc |
32260754 |
T |
|
| Q |
696 |
cggcaaagaagataagttgcatagttatacattctcgccaatcctcaagtgcagccaaatttgtggtcatgccaacataaacaaagaagaaaggtaacaa |
795 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32260753 |
cggcaaagaagataagttgcatagttatacattctcgccaatcctcaagtgcagccaaatttgtggtcatgccaacataaacaaagaagaaaggtaacaa |
32260654 |
T |
|
| Q |
796 |
aaattctgagatgataagttcacacttttcaaccaatgttgtccctaaagggggtccactcggaataatca |
866 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32260653 |
aaattctgagatgataagttcacacttttcaaccaatgttgtccctaaagggggtccactcggaataatca |
32260583 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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