View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14038_low_15 (Length: 425)
Name: NF14038_low_15
Description: NF14038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14038_low_15 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 17 - 410
Target Start/End: Original strand, 49342809 - 49343205
Alignment:
| Q |
17 |
aatatccagcacgacgccgttttaccgaaccttgcattgcatgcttccaactccataatca---tcatttcccaaaaaaccctaaacctctcatttcatc |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
49342809 |
aatatccagcacgacgccgttttaccgaaccttgcattgcatgcttccaactccatcatcatcatcatttcccaaaaaaccctaaacctctcatttcatc |
49342908 |
T |
|
| Q |
114 |
atctcgccatgaaggaccgcccttcgctgtcctcccatggcgccatctatgttcctcctcaccatcgtctccgctccgtcgttacctccgcctcccccgc |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49342909 |
atctcgccatgaaggaccgcccttcgctgtcctcccatggcgccatctatgttcctcctcaccatcgtctccgctccgtcgttacctccgcctcccccgc |
49343008 |
T |
|
| Q |
214 |
tcccatttccgtcaaactcagccaaaatcaaccaccgccacctaccactctccaaacccccttatccaacaacaatgcaaattctcccttcgtttctgct |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
49343009 |
tcccatttccgtcaaactcagccaaaatcaaccaccgccacctaccactctccaaacccccttatccaacaacaatgcaaattctcgcttcgtttctgct |
49343108 |
T |
|
| Q |
314 |
tacgacgacgtcatttccgaggattgctccaaccatcaacttcacgttccttccctaccggtaacttcatttaaatttctccttcttatgtttattt |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49343109 |
tacgacgacgtcatttccgaggattgctccaaccatcaacttcacgttccttccctaccggtaacttcatttaaatttctccttcttatgtttattt |
49343205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University