View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14038_low_17 (Length: 388)

Name: NF14038_low_17
Description: NF14038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14038_low_17
NF14038_low_17
[»] chr7 (13 HSPs)
chr7 (4-311)||(42691378-42691680)
chr7 (322-373)||(11998004-11998055)
chr7 (322-373)||(22703641-22703692)
chr7 (6-47)||(36118090-36118131)
chr7 (322-366)||(29861832-29861876)
chr7 (322-373)||(2751426-2751477)
chr7 (322-373)||(16374149-16374200)
chr7 (322-373)||(17196945-17196996)
chr7 (322-373)||(22120043-22120094)
chr7 (322-373)||(28089974-28090025)
chr7 (322-373)||(31274068-31274119)
chr7 (322-373)||(40542905-40542956)
chr7 (4-47)||(46700851-46700894)
[»] chr1 (10 HSPs)
chr1 (1-47)||(10574358-10574404)
chr1 (322-373)||(15059397-15059448)
chr1 (322-373)||(4621232-4621283)
chr1 (322-373)||(14603947-14603998)
chr1 (322-373)||(27454859-27454910)
chr1 (327-373)||(23041673-23041719)
chr1 (322-371)||(26513143-26513192)
chr1 (6-47)||(50428478-50428519)
chr1 (322-374)||(23734267-23734319)
chr1 (322-374)||(23741459-23741511)
[»] chr8 (16 HSPs)
chr8 (322-374)||(34610682-34610734)
chr8 (322-373)||(28964187-28964238)
chr8 (322-373)||(42328159-42328210)
chr8 (322-366)||(39349418-39349462)
chr8 (322-373)||(2639406-2639457)
chr8 (322-373)||(3734618-3734669)
chr8 (322-373)||(4718800-4718851)
chr8 (322-373)||(8765521-8765572)
chr8 (322-373)||(14633109-14633160)
chr8 (322-373)||(19471765-19471816)
chr8 (322-373)||(19542689-19542740)
chr8 (322-373)||(19589956-19590007)
chr8 (322-373)||(20306063-20306114)
chr8 (322-373)||(21092696-21092747)
chr8 (322-373)||(34237650-34237701)
chr8 (322-366)||(6953003-6953047)
[»] chr4 (9 HSPs)
chr4 (322-373)||(23131431-23131482)
chr4 (322-373)||(45787699-45787750)
chr4 (322-373)||(27528790-27528841)
chr4 (322-373)||(34844753-34844804)
chr4 (322-373)||(44343665-44343716)
chr4 (327-373)||(52494639-52494685)
chr4 (324-373)||(40058849-40058898)
chr4 (322-366)||(5609197-5609241)
chr4 (322-366)||(19660527-19660571)
[»] chr3 (14 HSPs)
chr3 (322-373)||(40133444-40133495)
chr3 (322-366)||(25289710-25289754)
chr3 (322-373)||(3747732-3747783)
chr3 (322-373)||(8097274-8097325)
chr3 (322-373)||(10083814-10083865)
chr3 (322-373)||(10190737-10190788)
chr3 (322-365)||(25344053-25344096)
chr3 (322-373)||(26174264-26174315)
chr3 (322-373)||(32151575-32151626)
chr3 (322-373)||(53424172-53424223)
chr3 (322-373)||(53848429-53848480)
chr3 (1-47)||(49786999-49787045)
chr3 (322-366)||(24165710-24165754)
chr3 (322-366)||(30807148-30807192)
[»] chr2 (7 HSPs)
chr2 (322-373)||(34516409-34516460)
chr2 (6-47)||(38609918-38609959)
chr2 (322-373)||(18692111-18692162)
chr2 (322-373)||(44946048-44946099)
chr2 (6-47)||(5147160-5147201)
chr2 (322-374)||(1845044-1845096)
chr2 (322-366)||(27290732-27290776)
[»] chr5 (12 HSPs)
chr5 (327-373)||(5049287-5049333)
chr5 (322-364)||(25548529-25548571)
chr5 (322-366)||(15971084-15971128)
chr5 (322-373)||(8484656-8484707)
chr5 (322-373)||(10631284-10631335)
chr5 (322-373)||(10869560-10869611)
chr5 (322-373)||(18207358-18207409)
chr5 (322-373)||(19456206-19456257)
chr5 (322-373)||(27498726-27498777)
chr5 (322-373)||(37495205-37495256)
chr5 (322-373)||(41351099-41351150)
chr5 (1-39)||(35470320-35470358)
[»] scaffold0200 (1 HSPs)
scaffold0200 (330-374)||(26605-26649)
[»] chr6 (8 HSPs)
chr6 (322-366)||(11007323-11007367)
chr6 (322-373)||(3222631-3222682)
chr6 (322-373)||(5360066-5360117)
chr6 (322-373)||(15360093-15360144)
chr6 (322-373)||(34147497-34147548)
chr6 (322-373)||(34160113-34160164)
chr6 (1-47)||(2844131-2844177)
chr6 (322-366)||(21982316-21982360)
[»] scaffold0576 (1 HSPs)
scaffold0576 (322-373)||(5077-5128)
[»] scaffold0366 (1 HSPs)
scaffold0366 (322-373)||(9295-9345)
[»] scaffold0217 (1 HSPs)
scaffold0217 (322-373)||(7304-7355)
[»] scaffold0014 (1 HSPs)
scaffold0014 (1-47)||(198010-198056)
[»] scaffold0070 (1 HSPs)
scaffold0070 (322-366)||(40482-40526)


Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 4 - 311
Target Start/End: Original strand, 42691378 - 42691680
Alignment:
Q  4 atgagtagtatgaatatttagaaaatataattgagtgatttaaaggcacctaaatgctacccctaaaatgaaaaagctgtcattcaacaataatcattat 103  Q
    |||||| ||||||||||||| ||||| || ||||||  |||||||||||| ||||||||||||||||||||||||||   |||| |||||||||||||||    
T  42691378 atgagtggtatgaatatttaaaaaatgtagttgagtcgtttaaaggcaccaaaatgctacccctaaaatgaaaaagc---cattgaacaataatcattat 42691474  T
Q  104 tcaatcatactaatagaaaaaccctttcatcaaaaagtgatatcttaaatttttaaaacaagttttatttattaattctttaaccaatgtcctaaaacat 203  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||    
T  42691475 tcaatcatactaatagaaaaaccctttcatcaaaa-gtgatatcttaaatttttaaaacaagttttatttatcaattctttaaccaatgtcctaaagcat 42691573  T
Q  204 ctatatcatgaaacacatgtttaaaaaacttttatttttaagtctcgtgctaacttgtatctttaaggcacatgttaaggaatttaaaaataaaaatatt 303  Q
    ||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  42691574 ctatatcatgaaacacatgtttacaaaacttttatttttaagtcttatgctaacttgtatctttaaggcacatgttaagg-attcaaaaataaaaatatt 42691672  T
Q  304 ttctaaag 311  Q
    ||||||||    
T  42691673 ttctaaag 42691680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 322 - 373
Target Start/End: Complemental strand, 11998055 - 11998004
Alignment:
Q  322 ttttgaaaacttggtattcgatcaaagaatcgactaattcgagggcaccaat 373  Q
    ||||||||||| ||||| ||||| ||||||||||||||||||||| ||||||    
T  11998055 ttttgaaaactcggtatccgatccaagaatcgactaattcgaggggaccaat 11998004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 322 - 373
Target Start/End: Complemental strand, 22703692 - 22703641
Alignment:
Q  322 ttttgaaaacttggtattcgatcaaagaatcgactaattcgagggcaccaat 373  Q
    ||||||||||| ||||| |||||||||||||||||||| |||||| ||||||    
T  22703692 ttttgaaaactgggtatccgatcaaagaatcgactaatccgaggggaccaat 22703641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 36118131 - 36118090
Alignment:
Q  6 gagtagtatgaatatttagaaaatataattgagtgatttaaa 47  Q
    |||||||||||||||||||||||| |||||||||| ||||||    
T  36118131 gagtagtatgaatatttagaaaatgtaattgagtggtttaaa 36118090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 366
Target Start/End: Complemental strand, 29861876 - 29861832
Alignment:
Q  322 ttttgaaaacttggtattcgatcaaagaatcgactaattcgaggg 366  Q
    ||||||||||| ||||| ||||| |||||||||||||||||||||    
T  29861876 ttttgaaaactcggtatccgatctaagaatcgactaattcgaggg 29861832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 373
Target Start/End: Complemental strand, 2751477 - 2751426
Alignment:
Q  322 ttttgaaaacttggtattcgatcaaagaatcgactaattcgagggcaccaat 373  Q
    ||||||||||| ||||| ||||| |||||||||||||| |||||| ||||||    
T  2751477 ttttgaaaactcggtatccgatccaagaatcgactaatccgaggggaccaat 2751426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 373
Target Start/End: Complemental strand, 16374200 - 16374149
Alignment:
Q  322 ttttgaaaacttggtattcgatcaaagaatcgactaattcgagggcaccaat 373  Q
    ||||||||||| ||||| ||||| |||||||||||||| |||||| ||||||    
T  16374200 ttttgaaaactcggtatccgatccaagaatcgactaatccgaggggaccaat 16374149  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 373
Target Start/End: Original strand, 17196945 - 17196996
Alignment:
Q  322 ttttgaaaacttggtattcgatcaaagaatcgactaattcgagggcaccaat 373  Q
    |||| |||||| ||||| ||||| ||||||||||||||||||||| ||||||    
T  17196945 tttttaaaactcggtatccgatccaagaatcgactaattcgaggggaccaat 17196996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 373
Target Start/End: Complemental strand, 22120094 - 22120043
Alignment:
Q  322 ttttgaaaacttggtattcgatcaaagaatcgactaattcgagggcaccaat 373  Q
    ||||||||||| ||||| ||||| |||||||||||||| |||||| ||||||    
T  22120094 ttttgaaaactcggtatccgatccaagaatcgactaatccgaggggaccaat 22120043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 373
Target Start/End: Complemental strand, 28090025 - 28089974
Alignment:
Q  322 ttttgaaaacttggtattcgatcaaagaatcgactaattcgagggcaccaat 373  Q
    ||||||||||| ||||| ||||| |||||||||||||| |||||| ||||||    
T  28090025 ttttgaaaactcggtatccgatccaagaatcgactaatccgaggggaccaat 28089974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 373
Target Start/End: Complemental strand, 31274119 - 31274068
Alignment:
Q  322 ttttgaaaacttggtattcgatcaaagaatcgactaattcgagggcaccaat 373  Q
    ||||||||||| ||||| || || ||||||||||||||||||||| ||||||    
T  31274119 ttttgaaaactcggtatccggtccaagaatcgactaattcgaggggaccaat 31274068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 373
Target Start/End: Original strand, 40542905 - 40542956
Alignment:
Q  322 ttttgaaaacttggtattcgatcaaagaatcgactaattcgagggcaccaat 373  Q
    ||||||||||| ||||| ||||| |||||||||||||| |||||| ||||||    
T  40542905 ttttgaaaactcggtatccgatccaagaatcgactaatccgaggggaccaat 40542956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 4 - 47
Target Start/End: Original strand, 46700851 - 46700894
Alignment:
Q  4 atgagtagtatgaatatttagaaaatataattgagtgatttaaa 47  Q
    |||||||||||||||||||||||||||||||  |||| ||||||    
T  46700851 atgagtagtatgaatatttagaaaatataatatagtggtttaaa 46700894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 10574358 - 10574404
Alignment:
Q  1 tagatgagtagtatgaatatttagaaaatataattgagtgatttaaa 47  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||    
T  10574358 tagatgagtagtatgaatatttaaaaaatataattgagtgatttaaa 10574404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 322 - 373
Target Start/End: Original strand, 15059397 - 15059448
Alignment:
Q  322 ttttgaaaacttggtattcgatcaaagaatcgactaattcgagggcaccaat 373  Q
    ||||||||||| ||||| ||||| ||||||||||||||||||||| ||||||    
T  15059397 ttttgaaaactcggtatccgatccaagaatcgactaattcgaggggaccaat 15059448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 373
Target Start/End: Original strand, 4621232 - 4621283
Alignment:
Q  322 ttttgaaaacttggtattcgatcaaagaatcgactaattcgagggcaccaat 373  Q
    ||||||||||| ||||| ||||| |||||||||||||| |||||| ||||||    
T  4621232 ttttgaaaactcggtatccgatccaagaatcgactaatccgaggggaccaat 4621283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 373
Target Start/End: Complemental strand, 14603998 - 14603947
Alignment:
Q  322 ttttgaaaacttggtattcgatcaaagaatcgactaattcgagggcaccaat 373  Q
    ||||||||||| ||||| ||||| |||||||||||||| |||||| ||||||    
T  14603998 ttttgaaaactcggtatccgatccaagaatcgactaatccgaggggaccaat 14603947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 373
Target Start/End: Original strand, 27454859 - 27454910
Alignment:
Q  322 ttttgaaaacttggtattcgatcaaagaatcgactaattcgagggcaccaat 373  Q
    ||||||||||| ||||| ||||| |||||||||||||| |||||| ||||||    
T  27454859 ttttgaaaactaggtatccgatccaagaatcgactaatccgaggggaccaat 27454910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 327 - 373
Target Start/End: Complemental strand, 23041719 - 23041673
Alignment:
Q  327 aaaacttggtattcgatcaaagaatcgactaattcgagggcaccaat 373  Q
    |||||| ||||| ||||| ||||||||||||||||||||| ||||||    
T  23041719 aaaactcggtatccgatccaagaatcgactaattcgaggggaccaat 23041673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 322 - 371
Target Start/End: Original strand, 26513143 - 26513192
Alignment:
Q  322 ttttgaaaacttggtattcgatcaaagaatcgactaattcgagggcacca 371  Q
    |||| |||||| ||||||||||| |||||||||||||| |||||| ||||    
T  26513143 tttttaaaactcggtattcgatccaagaatcgactaatccgaggggacca 26513192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 47
Target Start/End: Original strand, 50428478 - 50428519
Alignment:
Q  6 gagtagtatgaatatttagaaaatataattgagtgatttaaa 47  Q
    |||| ||||| |||||||||||||||| ||||||||||||||    
T  50428478 gagtggtatggatatttagaaaatatagttgagtgatttaaa 50428519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 322 - 374
Target Start/End: Complemental strand, 23734319 - 23734267
Alignment:
Q  322 ttttgaaaacttggtattcgatcaaagaatcgactaattcgagggcaccaatt 374  Q
    ||||||||||||||||| ||||  ||||||||||||||  ||||| |||||||    
T  23734319 ttttgaaaacttggtatccgattcaagaatcgactaatctgaggggaccaatt 23734267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 322 - 374
Target Start/End: Complemental strand, 23741511 - 23741459
Alignment:
Q  322 ttttgaaaacttggtattcgatcaaagaatcgactaattcgagggcaccaatt 374  Q
    ||||||||||||||||| ||||  ||||||||||||||  ||||| |||||||    
T  23741511 ttttgaaaacttggtatccgattcaagaatcgactaatctgaggggaccaatt 23741459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 322 - 374
Target Start/End: Original strand, 34610682 - 34610734
Alignment:
Q  322 ttttgaaaacttggtattcgatcaaagaatcgactaattcgagggcaccaatt 374  Q
    ||||||||||| ||||| ||||| ||||||||||||||||||||| |||||||    
T  34610682 ttttgaaaactcggtatccgatccaagaatcgactaattcgaggggaccaatt 34610734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 322 - 373
Target Start/End: Complemental strand, 28964238 - 28964187
Alignment:
Q  322 ttttgaaaacttggtattcgatcaaagaatcgactaattcgagggcaccaat 373  Q
    |||||||||||  |||||||||| ||||||||||||||||||||| ||||||    
T  28964238 ttttgaaaactcagtattcgatctaagaatcgactaattcgaggggaccaat 28964187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 322 - 373
Target Start/End: Complemental strand, 42328210 - 42328159
Alignment:
Q  322 ttttgaaaacttggtattcgatcaaagaatcgactaattcgagggcaccaat 373  Q
    ||||||||||| ||||| ||||| ||||||||||||||||||||| ||||||    
T  42328210 ttttgaaaactcggtatccgatccaagaatcgactaattcgaggggaccaat 42328159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 366
Target Start/End: Complemental strand, 39349462 - 39349418
Alignment:
Q  322 ttttgaaaacttggtattcgatcaaagaatcgactaattcgaggg 366  Q
    ||||||||||||||||| ||||| |||||||||||||| ||||||    
T  39349462 ttttgaaaacttggtatccgatccaagaatcgactaatccgaggg 39349418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 373
Target Start/End: Original strand, 2639406 - 2639457
Alignment:
Q  322 ttttgaaaacttggtattcgatcaaagaatcgactaattcgagggcaccaat 373  Q
    ||||||||||| ||||| ||||| |||||||||||||| |||||| ||||||    
T  2639406 ttttgaaaactcggtatccgatccaagaatcgactaatccgaggggaccaat 2639457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 373
Target Start/End: Original strand, 3734618 - 3734669
Alignment:
Q  322 ttttgaaaacttggtattcgatcaaagaatcgactaattcgagggcaccaat 373  Q
    ||||||||||| ||||| ||||| |||||||||||||| |||||| ||||||    
T  3734618 ttttgaaaactcggtatccgatccaagaatcgactaatccgaggggaccaat 3734669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 373
Target Start/End: Complemental strand, 4718851 - 4718800
Alignment:
Q  322 ttttgaaaacttggtattcgatcaaagaatcgactaattcgagggcaccaat 373  Q
    ||||||||||| ||||| ||||| |||||||||||||| |||||| ||||||    
T  4718851 ttttgaaaactcggtatccgatccaagaatcgactaatccgaggggaccaat 4718800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 373
Target Start/End: Original strand, 8765521 - 8765572
Alignment:
Q  322 ttttgaaaacttggtattcgatcaaagaatcgactaattcgagggcaccaat 373  Q
    ||||||||||| ||||| ||||| |||||||||||||| |||||| ||||||    
T  8765521 ttttgaaaactcggtatccgatccaagaatcgactaatccgaggggaccaat 8765572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 373
Target Start/End: Complemental strand, 14633160 - 14633109
Alignment:
Q  322 ttttgaaaacttggtattcgatcaaagaatcgactaattcgagggcaccaat 373  Q
    ||||||||||||||||| ||||| |||||||||||||| | |||| ||||||    
T  14633160 ttttgaaaacttggtatccgatccaagaatcgactaatccaaggggaccaat 14633109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 373
Target Start/End: Complemental strand, 19471816 - 19471765
Alignment:
Q  322 ttttgaaaacttggtattcgatcaaagaatcgactaattcgagggcaccaat 373  Q
    ||||||||||| ||||| ||||| ||| ||||||||||||||||| ||||||    
T  19471816 ttttgaaaactcggtatccgatccaagtatcgactaattcgaggggaccaat 19471765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 373
Target Start/End: Complemental strand, 19542740 - 19542689
Alignment:
Q  322 ttttgaaaacttggtattcgatcaaagaatcgactaattcgagggcaccaat 373  Q
    ||||||||||| ||||| ||||| ||| ||||||||||||||||| ||||||    
T  19542740 ttttgaaaactcggtatccgatccaagtatcgactaattcgaggggaccaat 19542689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 373
Target Start/End: Original strand, 19589956 - 19590007
Alignment:
Q  322 ttttgaaaacttggtattcgatcaaagaatcgactaattcgagggcaccaat 373  Q
    ||||||||||| ||||| ||||| ||| ||||||||||||||||| ||||||    
T  19589956 ttttgaaaactcggtatccgatccaagtatcgactaattcgaggggaccaat 19590007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 373
Target Start/End: Complemental strand, 20306114 - 20306063
Alignment:
Q  322 ttttgaaaacttggtattcgatcaaagaatcgactaattcgagggcaccaat 373  Q
    ||||||||||| ||||| ||||| ||| ||||||||||||||||| ||||||    
T  20306114 ttttgaaaactcggtatccgatccaaggatcgactaattcgaggggaccaat 20306063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 373
Target Start/End: Complemental strand, 21092747 - 21092696
Alignment:
Q  322 ttttgaaaacttggtattcgatcaaagaatcgactaattcgagggcaccaat 373  Q
    ||||||||||| ||||| ||||| ||| ||||||||||||||||| ||||||    
T  21092747 ttttgaaaactcggtatccgatccaaggatcgactaattcgaggggaccaat 21092696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 373
Target Start/End: Original strand, 34237650 - 34237701
Alignment:
Q  322 ttttgaaaacttggtattcgatcaaagaatcgactaattcgagggcaccaat 373  Q
    ||||||||||| ||||| ||||| |||||||||||||| |||||| ||||||    
T  34237650 ttttgaaaactcggtatccgatccaagaatcgactaatccgaggggaccaat 34237701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 322 - 366
Target Start/End: Original strand, 6953003 - 6953047
Alignment:
Q  322 ttttgaaaacttggtattcgatcaaagaatcgactaattcgaggg 366  Q
    |||| |||||| ||||||||||| |||||||||||||| ||||||    
T  6953003 tttttaaaactcggtattcgatccaagaatcgactaatccgaggg 6953047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 322 - 373
Target Start/End: Original strand, 23131431 - 23131482
Alignment:
Q  322 ttttgaaaacttggtattcgatcaaagaatcgactaattcgagggcaccaat 373  Q
    ||||||||||| ||||| ||||| ||||||||||||||||||||| ||||||    
T  23131431 ttttgaaaactcggtatccgatcgaagaatcgactaattcgaggggaccaat 23131482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 322 - 373
Target Start/End: Original strand, 45787699 - 45787750
Alignment:
Q  322 ttttgaaaacttggtattcgatcaaagaatcgactaattcgagggcaccaat 373  Q
    ||||||||||| ||||| ||||| ||||||||||||||||||||| ||||||    
T  45787699 ttttgaaaactcggtatccgatccaagaatcgactaattcgaggggaccaat 45787750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 373
Target Start/End: Original strand, 27528790 - 27528841
Alignment:
Q  322 ttttgaaaacttggtattcgatcaaagaatcgactaattcgagggcaccaat 373  Q
    ||||||||||| ||||| ||||| |||||||||||||| |||||| ||||||    
T  27528790 ttttgaaaactcggtatccgatccaagaatcgactaatccgaggggaccaat 27528841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 373
Target Start/End: Original strand, 34844753 - 34844804
Alignment:
Q  322 ttttgaaaacttggtattcgatcaaagaatcgactaattcgagggcaccaat 373  Q
    ||||||||||| ||||| ||||| |||||||||||||| |||||| ||||||    
T  34844753 ttttgaaaactcggtatccgatccaagaatcgactaatccgaggggaccaat 34844804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 373
Target Start/End: Complemental strand, 44343716 - 44343665
Alignment:
Q  322 ttttgaaaacttggtattcgatcaaagaatcgactaattcgagggcaccaat 373  Q
    ||||||||||| ||||| ||||  ||||||||||||||||||||| ||||||    
T  44343716 ttttgaaaactcggtatccgattcaagaatcgactaattcgaggggaccaat 44343665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 327 - 373
Target Start/End: Complemental strand, 52494685 - 52494639
Alignment:
Q  327 aaaacttggtattcgatcaaagaatcgactaattcgagggcaccaat 373  Q
    |||||| ||||| ||||| ||||||||||||||||||||| ||||||    
T  52494685 aaaactcggtatccgatccaagaatcgactaattcgaggggaccaat 52494639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 373
Target Start/End: Original strand, 40058849 - 40058898
Alignment:
Q  324 ttgaaaacttggtattcgatcaaagaatcgactaattcgagggcaccaat 373  Q
    ||||||||| ||||| ||||| |||||||||||||| |||||| ||||||    
T  40058849 ttgaaaactcggtatccgatccaagaatcgactaatccgaggggaccaat 40058898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 322 - 366
Target Start/End: Original strand, 5609197 - 5609241
Alignment:
Q  322 ttttgaaaacttggtattcgatcaaagaatcgactaattcgaggg 366  Q
    ||||||||||| ||||| ||||| |||||||||||||| ||||||    
T  5609197 ttttgaaaactcggtatccgatccaagaatcgactaatccgaggg 5609241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 322 - 366
Target Start/End: Original strand, 19660527 - 19660571
Alignment:
Q  322 ttttgaaaacttggtattcgatcaaagaatcgactaattcgaggg 366  Q
    ||||||||||| ||||| ||||| |||||||||||||| ||||||    
T  19660527 ttttgaaaactcggtatccgatccaagaatcgactaatccgaggg 19660571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 322 - 373
Target Start/End: Original strand, 40133444 - 40133495
Alignment:
Q  322 ttttgaaaacttggtattcgatcaaagaatcgactaattcgagggcaccaat 373  Q
    ||||||||||| ||||| ||||| ||||||||||||||||||||| ||||||    
T  40133444 ttttgaaaactcggtatccgatccaagaatcgactaattcgaggggaccaat 40133495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 366
Target Start/End: Original strand, 25289710 - 25289754
Alignment:
Q  322 ttttgaaaacttggtattcgatcaaagaatcgactaattcgaggg 366  Q
    ||||||||||| ||||| ||||| |||||||||||||||||||||    
T  25289710 ttttgaaaactcggtatccgatccaagaatcgactaattcgaggg 25289754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 373
Target Start/End: Complemental strand, 3747783 - 3747732
Alignment:
Q  322 ttttgaaaacttggtattcgatcaaagaatcgactaattcgagggcaccaat 373  Q
    ||||||||||| ||||| ||||| |||||||||||||| |||||| ||||||    
T  3747783 ttttgaaaactcggtatccgatccaagaatcgactaatccgaggggaccaat 3747732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 373
Target Start/End: Original strand, 8097274 - 8097325
Alignment:
Q  322 ttttgaaaacttggtattcgatcaaagaatcgactaattcgagggcaccaat 373  Q
    ||||||||||| ||||| ||||| |||||||||||||| |||||| ||||||    
T  8097274 ttttgaaaactcggtatccgatccaagaatcgactaatccgaggggaccaat 8097325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 373
Target Start/End: Original strand, 10083814 - 10083865
Alignment:
Q  322 ttttgaaaacttggtattcgatcaaagaatcgactaattcgagggcaccaat 373  Q
    ||||||||||| ||||| ||||| |||||||||||||| |||||| ||||||    
T  10083814 ttttgaaaactcggtatccgatccaagaatcgactaatccgaggggaccaat 10083865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 373
Target Start/End: Original strand, 10190737 - 10190788
Alignment:
Q  322 ttttgaaaacttggtattcgatcaaagaatcgactaattcgagggcaccaat 373  Q
    ||||||||||| ||||| ||||| |||||||||||||| |||||| ||||||    
T  10190737 ttttgaaaactcggtatccgatccaagaatcgactaatccgaggggaccaat 10190788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 365
Target Start/End: Original strand, 25344053 - 25344096
Alignment:
Q  322 ttttgaaaacttggtattcgatcaaagaatcgactaattcgagg 365  Q
    ||||||||||| ||||||||||| |||||||||||||| |||||    
T  25344053 ttttgaaaactcggtattcgatctaagaatcgactaatccgagg 25344096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 373
Target Start/End: Complemental strand, 26174315 - 26174264
Alignment:
Q  322 ttttgaaaacttggtattcgatcaaagaatcgactaattcgagggcaccaat 373  Q
    ||||||||||| ||||| ||||| |||||||||||||| |||||| ||||||    
T  26174315 ttttgaaaactcggtatccgatccaagaatcgactaatccgaggggaccaat 26174264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 373
Target Start/End: Complemental strand, 32151626 - 32151575
Alignment:
Q  322 ttttgaaaacttggtattcgatcaaagaatcgactaattcgagggcaccaat 373  Q
    |||| |||||| ||||| ||||| ||||||||||||||||||||| ||||||    
T  32151626 ttttaaaaactcggtatccgatccaagaatcgactaattcgaggggaccaat 32151575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 373
Target Start/End: Original strand, 53424172 - 53424223
Alignment:
Q  322 ttttgaaaacttggtattcgatcaaagaatcgactaattcgagggcaccaat 373  Q
    ||||||||||| ||||| ||||| |||||||||||||| |||||| ||||||    
T  53424172 ttttgaaaactcggtatccgatccaagaatcgactaatccgaggggaccaat 53424223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 373
Target Start/End: Original strand, 53848429 - 53848480
Alignment:
Q  322 ttttgaaaacttggtattcgatcaaagaatcgactaattcgagggcaccaat 373  Q
    ||||||||||| ||||| ||||| |||||||||||||| |||||| ||||||    
T  53848429 ttttgaaaactcggtatccgatccaagaatcgactaatccgaggggaccaat 53848480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 49787045 - 49786999
Alignment:
Q  1 tagatgagtagtatgaatatttagaaaatataattgagtgatttaaa 47  Q
    ||||||||| ||||||||||||| |||||||| ||||||| ||||||    
T  49787045 tagatgagtggtatgaatatttataaaatatagttgagtggtttaaa 49786999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 322 - 366
Target Start/End: Original strand, 24165710 - 24165754
Alignment:
Q  322 ttttgaaaacttggtattcgatcaaagaatcgactaattcgaggg 366  Q
    ||||||||||| ||||| ||||| |||||||||||||| ||||||    
T  24165710 ttttgaaaactcggtatccgatccaagaatcgactaatccgaggg 24165754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 322 - 366
Target Start/End: Original strand, 30807148 - 30807192
Alignment:
Q  322 ttttgaaaacttggtattcgatcaaagaatcgactaattcgaggg 366  Q
    ||||||||||| ||||| ||||| |||||||||||||| ||||||    
T  30807148 ttttgaaaactcggtatccgatccaagaatcgactaatccgaggg 30807192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 322 - 373
Target Start/End: Original strand, 34516409 - 34516460
Alignment:
Q  322 ttttgaaaacttggtattcgatcaaagaatcgactaattcgagggcaccaat 373  Q
    ||||||||||||||||| ||||| |||||||||||||| |||||| ||||||    
T  34516409 ttttgaaaacttggtatccgatccaagaatcgactaatccgaggggaccaat 34516460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 6 - 47
Target Start/End: Original strand, 38609918 - 38609959
Alignment:
Q  6 gagtagtatgaatatttagaaaatataattgagtgatttaaa 47  Q
    |||||||||| |||||||||||||||||||||||| ||||||    
T  38609918 gagtagtatggatatttagaaaatataattgagtggtttaaa 38609959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 373
Target Start/End: Complemental strand, 18692162 - 18692111
Alignment:
Q  322 ttttgaaaacttggtattcgatcaaagaatcgactaattcgagggcaccaat 373  Q
    ||||||||||| ||||| ||||| |||||||||||||| |||||| ||||||    
T  18692162 ttttgaaaactcggtatccgatccaagaatcgactaatacgaggggaccaat 18692111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 373
Target Start/End: Original strand, 44946048 - 44946099
Alignment:
Q  322 ttttgaaaacttggtattcgatcaaagaatcgactaattcgagggcaccaat 373  Q
    ||||||||||| ||||| ||||| |||||||||||||| |||||| ||||||    
T  44946048 ttttgaaaactcggtatccgatccaagaatcgactaatccgaggggaccaat 44946099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 5147201 - 5147160
Alignment:
Q  6 gagtagtatgaatatttagaaaatataattgagtgatttaaa 47  Q
    |||||||||||||||||||||||| || |||| |||||||||    
T  5147201 gagtagtatgaatatttagaaaatgtagttgaatgatttaaa 5147160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 322 - 374
Target Start/End: Original strand, 1845044 - 1845096
Alignment:
Q  322 ttttgaaaacttggtattcgatcaaagaatcgactaattcgagggcaccaatt 374  Q
    ||||||||||| ||||| ||| | ||||||||||||||| ||||| |||||||    
T  1845044 ttttgaaaactcggtatccgagccaagaatcgactaatttgaggggaccaatt 1845096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 322 - 366
Target Start/End: Complemental strand, 27290776 - 27290732
Alignment:
Q  322 ttttgaaaacttggtattcgatcaaagaatcgactaattcgaggg 366  Q
    ||||||||||| ||||| ||||| |||||||||||||| ||||||    
T  27290776 ttttgaaaactcggtatccgatccaagaatcgactaatccgaggg 27290732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 327 - 373
Target Start/End: Complemental strand, 5049333 - 5049287
Alignment:
Q  327 aaaacttggtattcgatcaaagaatcgactaattcgagggcaccaat 373  Q
    |||||||||||||||||| |||||||||||||||||| || ||||||    
T  5049333 aaaacttggtattcgatccaagaatcgactaattcgatgggaccaat 5049287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 322 - 364
Target Start/End: Original strand, 25548529 - 25548571
Alignment:
Q  322 ttttgaaaacttggtattcgatcaaagaatcgactaattcgag 364  Q
    ||||||||||| ||||||||||| |||||||||||||||||||    
T  25548529 ttttgaaaactcggtattcgatccaagaatcgactaattcgag 25548571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 366
Target Start/End: Original strand, 15971084 - 15971128
Alignment:
Q  322 ttttgaaaacttggtattcgatcaaagaatcgactaattcgaggg 366  Q
    ||||||||| ||||||||||||  |||||||||||||||||||||    
T  15971084 ttttgaaaatttggtattcgattcaagaatcgactaattcgaggg 15971128  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 373
Target Start/End: Original strand, 8484656 - 8484707
Alignment:
Q  322 ttttgaaaacttggtattcgatcaaagaatcgactaattcgagggcaccaat 373  Q
    ||||||||||| ||||| ||||| |||||||||||||| |||||| ||||||    
T  8484656 ttttgaaaactcggtatccgatccaagaatcgactaatccgaggggaccaat 8484707  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 373
Target Start/End: Original strand, 10631284 - 10631335
Alignment:
Q  322 ttttgaaaacttggtattcgatcaaagaatcgactaattcgagggcaccaat 373  Q
    ||||||||||| ||||| ||||| |||||||||||||| |||||| ||||||    
T  10631284 ttttgaaaactcggtatccgatccaagaatcgactaatccgaggggaccaat 10631335  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 373
Target Start/End: Original strand, 10869560 - 10869611
Alignment:
Q  322 ttttgaaaacttggtattcgatcaaagaatcgactaattcgagggcaccaat 373  Q
    ||||||||||||||||| ||||| ||||| |||||||| |||||| ||||||    
T  10869560 ttttgaaaacttggtatccgatccaagaaccgactaatccgaggggaccaat 10869611  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 373
Target Start/End: Complemental strand, 18207409 - 18207358
Alignment:
Q  322 ttttgaaaacttggtattcgatcaaagaatcgactaattcgagggcaccaat 373  Q
    ||||||||||| ||||| ||||| |||||||||||||| |||||| ||||||    
T  18207409 ttttgaaaactcggtatccgatccaagaatcgactaatccgaggggaccaat 18207358  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 373
Target Start/End: Original strand, 19456206 - 19456257
Alignment:
Q  322 ttttgaaaacttggtattcgatcaaagaatcgactaattcgagggcaccaat 373  Q
    ||||||||||| ||||| ||||| |||||||||||||| |||||| ||||||    
T  19456206 ttttgaaaactcggtatccgatccaagaatcgactaatccgaggggaccaat 19456257  T

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Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 373
Target Start/End: Original strand, 27498726 - 27498777
Alignment:
Q  322 ttttgaaaacttggtattcgatcaaagaatcgactaattcgagggcaccaat 373  Q
    ||||||||||| ||||| ||||| |||||||||||||| |||||| ||||||    
T  27498726 ttttgaaaactcggtatccgatccaagaatcgactaatccgaggggaccaat 27498777  T

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Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 373
Target Start/End: Complemental strand, 37495256 - 37495205
Alignment:
Q  322 ttttgaaaacttggtattcgatcaaagaatcgactaattcgagggcaccaat 373  Q
    ||||||||||| ||||| ||||| |||||||||||||| |||||| ||||||    
T  37495256 ttttgaaaactcggtatccgatccaagaatcgactaatccgaggggaccaat 37495205  T

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Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 373
Target Start/End: Original strand, 41351099 - 41351150
Alignment:
Q  322 ttttgaaaacttggtattcgatcaaagaatcgactaattcgagggcaccaat 373  Q
    ||||||||||| ||||| ||||| |||||||||||||| |||||| ||||||    
T  41351099 ttttgaaaactcggtatccgatccaagaatcgactaatccgaggggaccaat 41351150  T

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Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 35470320 - 35470358
Alignment:
Q  1 tagatgagtagtatgaatatttagaaaatataattgagt 39  Q
    |||| ||||||||||||||||||||||||||| ||||||    
T  35470320 tagacgagtagtatgaatatttagaaaatatagttgagt 35470358  T

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Target: scaffold0200 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 330 - 374
Target Start/End: Original strand, 26605 - 26649
Alignment:
Q  330 acttggtattcgatcaaagaatcgactaattcgagggcaccaatt 374  Q
    ||||||||||||||| || |||||||||||||||||| |||||||    
T  26605 acttggtattcgatccaaaaatcgactaattcgaggggaccaatt 26649  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 366
Target Start/End: Complemental strand, 11007367 - 11007323
Alignment:
Q  322 ttttgaaaacttggtattcgatcaaagaatcgactaattcgaggg 366  Q
    ||||||||||| ||||| |||||||||||||||||||| ||||||    
T  11007367 ttttgaaaactaggtatccgatcaaagaatcgactaatccgaggg 11007323  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 373
Target Start/End: Original strand, 3222631 - 3222682
Alignment:
Q  322 ttttgaaaacttggtattcgatcaaagaatcgactaattcgagggcaccaat 373  Q
    ||||||||||| ||||| ||||| |||||||||||||| |||||| ||||||    
T  3222631 ttttgaaaactcggtatccgatccaagaatcgactaatccgaggggaccaat 3222682  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 373
Target Start/End: Original strand, 5360066 - 5360117
Alignment:
Q  322 ttttgaaaacttggtattcgatcaaagaatcgactaattcgagggcaccaat 373  Q
    |||| |||||| ||||| ||||| ||||||||||||||||||||| ||||||    
T  5360066 ttttcaaaactcggtatccgatctaagaatcgactaattcgaggggaccaat 5360117  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 373
Target Start/End: Original strand, 15360093 - 15360144
Alignment:
Q  322 ttttgaaaacttggtattcgatcaaagaatcgactaattcgagggcaccaat 373  Q
    ||||||||||| ||||| ||||| |||||||||||||| |||||| ||||||    
T  15360093 ttttgaaaactcggtatccgatccaagaatcgactaatccgaggggaccaat 15360144  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 373
Target Start/End: Complemental strand, 34147548 - 34147497
Alignment:
Q  322 ttttgaaaacttggtattcgatcaaagaatcgactaattcgagggcaccaat 373  Q
    ||||||||||| ||||| ||||| |||||||||||||| |||||| ||||||    
T  34147548 ttttgaaaactcggtatccgatccaagaatcgactaatccgaggggaccaat 34147497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 373
Target Start/End: Complemental strand, 34160164 - 34160113
Alignment:
Q  322 ttttgaaaacttggtattcgatcaaagaatcgactaattcgagggcaccaat 373  Q
    ||||||||||| ||||| ||||| |||||||||||||| |||||| ||||||    
T  34160164 ttttgaaaactcggtatccgatccaagaatcgactaatccgaggggaccaat 34160113  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 2844131 - 2844177
Alignment:
Q  1 tagatgagtagtatgaatatttagaaaatataattgagtgatttaaa 47  Q
    ||||||||||||||||||||||| ||||| || ||||||| ||||||    
T  2844131 tagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaa 2844177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 322 - 366
Target Start/End: Original strand, 21982316 - 21982360
Alignment:
Q  322 ttttgaaaacttggtattcgatcaaagaatcgactaattcgaggg 366  Q
    ||||||||||| ||||| ||||| |||||||||||||| ||||||    
T  21982316 ttttgaaaactcggtatccgatccaagaatcgactaatccgaggg 21982360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0576 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 373
Target Start/End: Original strand, 5077 - 5128
Alignment:
Q  322 ttttgaaaacttggtattcgatcaaagaatcgactaattcgagggcaccaat 373  Q
    ||||||||||| ||||| ||||| |||||||||||||| |||||| ||||||    
T  5077 ttttgaaaactcggtatccgatccaagaatcgactaatccgaggggaccaat 5128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0366 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0366
Description:

Target: scaffold0366; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 373
Target Start/End: Original strand, 9295 - 9345
Alignment:
Q  322 ttttgaaaacttggtattcgatcaaagaatcgactaattcgagggcaccaat 373  Q
    ||||||||||| ||||| ||||||| ||||||||||||||||||| ||||||    
T  9295 ttttgaaaactcggtatccgatcaa-gaatcgactaattcgaggggaccaat 9345  T

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Target: scaffold0217 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 373
Target Start/End: Original strand, 7304 - 7355
Alignment:
Q  322 ttttgaaaacttggtattcgatcaaagaatcgactaattcgagggcaccaat 373  Q
    |||| |||||||||||| ||||| |||||||||||||| |||||| ||||||    
T  7304 tttttaaaacttggtatccgatccaagaatcgactaatccgaggggaccaat 7355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 198010 - 198056
Alignment:
Q  1 tagatgagtagtatgaatatttagaaaatataattgagtgatttaaa 47  Q
    |||||||||||||| |||||||| || |||||||||||| |||||||    
T  198010 tagatgagtagtataaatatttaaaatatataattgagttatttaaa 198056  T

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Target: scaffold0070 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 322 - 366
Target Start/End: Complemental strand, 40526 - 40482
Alignment:
Q  322 ttttgaaaacttggtattcgatcaaagaatcgactaattcgaggg 366  Q
    ||||||||||| ||||| ||||| |||||||||||||| ||||||    
T  40526 ttttgaaaactcggtatccgatccaagaatcgactaatccgaggg 40482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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