View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14038_low_21 (Length: 359)
Name: NF14038_low_21
Description: NF14038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14038_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 42 - 307
Target Start/End: Complemental strand, 36165680 - 36165421
Alignment:
| Q |
42 |
gtaaaaactacaactccaatcactattgctacttatttaaatctatttgagttttccagtttagagtttgattcaacattcctaggctgattacagtttt |
141 |
Q |
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| T |
36165680 |
gtaaaaactacaactccaatcactattgctacttatttaaatctatttgagttttccagtttagagtttgattcaacattcctagactgattacagttt- |
36165582 |
T |
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| Q |
142 |
tgaaatttgaaatttggcaaatccaactaacagaactgcatgattcaaatcttctttcgcacatacgtctgggcatgaaacaccgcttacgtaagtttgc |
241 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
36165581 |
-gaaatttgaaatttggcaaatccaactaacagaactgcatgactcaaatcttctttcgcacatacgtctgggcatgaaacaccgcatacgtaagtttgc |
36165483 |
T |
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| Q |
242 |
atccaagctgcattaatagcagcttcatcaaacaaacaaacaaacatcagtaagtaatgtaaagtg |
307 |
Q |
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| T |
36165482 |
atccaagctgcattaatagcagcttcatcaaacaaaca----aacatcagtaagtaatgtaaagtg |
36165421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 4 - 105
Target Start/End: Complemental strand, 36166124 - 36166024
Alignment:
| Q |
4 |
atggtataaagatataaataaccaaaagaactacaaatgtaaaaactacaactccaatcactattgctacttatttaaatctatttgagttttccagttt |
103 |
Q |
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|||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
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| T |
36166124 |
atggtacaaagatataaataaccaaaataactacaa-tgtaaaaactacaactccaatcactattgctacatatttaaatctatttgagttttcgagttt |
36166026 |
T |
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| Q |
104 |
ag |
105 |
Q |
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|| |
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| T |
36166025 |
ag |
36166024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 65 - 140
Target Start/End: Complemental strand, 36166019 - 36165944
Alignment:
| Q |
65 |
tattgctacttatttaaatctatttgagttttccagtttagagtttgattcaacattcctaggctgattacagttt |
140 |
Q |
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||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||| |||| ||||||||||||| |
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| T |
36166019 |
tattgctacttatttaaatctatttgagttttcgagtttaggatttgattcaccattgctagactgattacagttt |
36165944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 311 - 345
Target Start/End: Complemental strand, 36165401 - 36165367
Alignment:
| Q |
311 |
gcaaagacaaatatactggcagaacagcaactagc |
345 |
Q |
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| T |
36165401 |
gcaaagacaaatatactggcagaacaacaactagc |
36165367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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