View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14038_low_23 (Length: 348)
Name: NF14038_low_23
Description: NF14038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14038_low_23 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 18 - 339
Target Start/End: Original strand, 12692969 - 12693290
Alignment:
| Q |
18 |
gaggataccagcaattggattgaaagattttcatatcgtagttggaatcgttgtttttaaagattttggaaacgaagcttcaattgttatttgtctttca |
117 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
12692969 |
gaggataccagcaattggattgaaagattgccatatcgtagttggaatcgttgtttttaaagattttgaaaacgatgcttcaattgttatttgtctttca |
12693068 |
T |
|
| Q |
118 |
tacagtgaaaatgttcttttgtacgagcttctgagagcaattgaaatatcaaagaattcatttagttgtattttatactaattttgatttcgatgctata |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
12693069 |
tacagtgaaaatgttcttttgtacgagcttctgagagcaattgaaatatcaaagaattcatttagttgtattttatactaattttgatttcgatgttata |
12693168 |
T |
|
| Q |
218 |
gaaaggtctgctccacacaacctagtggtttaaagctagatgataaacctttgttactaacaccctctgcagcaaattgtatcgcaactcttggtcacct |
317 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12693169 |
gaaaggtctgctccacacaaactagtggtttaaagctagatgataaacctttgttactaacaccctctgcagcaaattgtatcgcaactcttggtcacct |
12693268 |
T |
|
| Q |
318 |
aaatttacaatataagttagcc |
339 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
12693269 |
aaatttacaatataagttagcc |
12693290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 192 - 268
Target Start/End: Complemental strand, 12689431 - 12689355
Alignment:
| Q |
192 |
atactaattttgatttcgatgctatagaaaggtctgctccacacaacctagtggtttaaagctagatgataaacctt |
268 |
Q |
| |
|
||||||||||||| ||| ||| ||||| ||||| |||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
12689431 |
atactaattttgaattcaatgttataggaaggtgtgctccacacaacctagtggttaaaagctagatgataaacctt |
12689355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 171 - 268
Target Start/End: Complemental strand, 12696164 - 12696067
Alignment:
| Q |
171 |
gaattcatttagttgtattttatactaattttgatttcgatgctatagaaaggtctgctccacacaacctagtggtttaaagctagatgataaacctt |
268 |
Q |
| |
|
||||||||||||||| | | ||||||||||||| || ||| ||||| || || |||||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
12696164 |
gaattcatttagttggagtcaatactaattttgaaatcaatgttatagtaacgtgtgctccacacaacctagtggttgaaagctagacgataaacctt |
12696067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University