View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14038_low_29 (Length: 309)
Name: NF14038_low_29
Description: NF14038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14038_low_29 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 12 - 290
Target Start/End: Original strand, 46034127 - 46034405
Alignment:
| Q |
12 |
aagaaggtttggaattgggaaaggaatggtcaatactccgttcgatcagcataccatctgctcaaggaagagacattacgaggcacccctgaagcatcag |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46034127 |
aagaaggtttggaattgggaaaggaatggtcaatactccgttcgatcagcataccatctgctcaaggaagagacattacgaggcacccctgaagcatcag |
46034226 |
T |
|
| Q |
112 |
taatgtgtaacaccggtatgtggaaggccatttggaaagttagaactcctcaaagggtcaggaatttcttatggagagctgctaaatgtatcttaccaac |
211 |
Q |
| |
|
||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46034227 |
taacgtgtaacaccggtatgtagaaggccatttggaaagttagaactcctcaaagggtcaggaatttcttatggagagctgctaaatgtatcttaccaac |
46034326 |
T |
|
| Q |
212 |
tagatgtaagctggagacaaaaggaattactctagacactagctgcccgttctgccatatcgacgaggaatcccaagac |
290 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46034327 |
tagatgtaagctggagacaaaaggaattactctagacactagctgcccgttctgccatatcgacgaggaatcccaagac |
46034405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 12 - 290
Target Start/End: Original strand, 39488005 - 39488283
Alignment:
| Q |
12 |
aagaaggtttggaattgggaaaggaatggtcaatactccgttcgatcagcataccatctgctcaaggaagagacattacgaggcacccctgaagcatcag |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
39488005 |
aagaaggtttggaattgggaaaggaatggtcaatactccgttcgatcagcataccatctactcaaggaagagacattacgaggcacccctgaagtatcag |
39488104 |
T |
|
| Q |
112 |
taatgtgtaacaccggtatgtggaaggccatttggaaagttagaactcctcaaagggtcaggaatttcttatggagagctgctaaatgtatcttaccaac |
211 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39488105 |
taacgtgtaacaccggtatgtggaaggccatttggaaagttagaactcctcaaagggtcaggaatttcttatggagagctgctaaatgtatcttaccaac |
39488204 |
T |
|
| Q |
212 |
tagatgtaagctggagacaaaaggaattactctagacactagctgcccgttctgccatatcgacgaggaatcccaagac |
290 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39488205 |
tagatgtaagctggagacaaaaggaattactctagacactagctgcccgttctgccatatcgacgaggaatcccaagac |
39488283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University