View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14038_low_3 (Length: 783)
Name: NF14038_low_3
Description: NF14038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14038_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 696; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 696; E-Value: 0
Query Start/End: Original strand, 18 - 773
Target Start/End: Original strand, 36330441 - 36331205
Alignment:
| Q |
18 |
ataacatatgctaccttcctttctaccttggcttgatcagcctctggaagtggtgtatgcatagttctagcattcttctcaattgattgaaccctaatct |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
36330441 |
ataacatatgctaccttcctttctaccttggcttgatcagcctctggaagtggtgtatgcatagttctaccattcttctcaattgattgaaccctaatct |
36330540 |
T |
|
| Q |
118 |
ttagtttattgtgatcaacaaaatttggattaagaagatcctctatggtaatgagtccatcaccacacacaacaacctcgcaactaggatcaaaagcatc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36330541 |
ttagtttattgtgatcaacaaaatttggattaagaagatcctctatggtaatgagtccatcaccacacacaacaacctcgcaactaggatcaaaagcatc |
36330640 |
T |
|
| Q |
218 |
actcatcatcaacttcttattctctgcattaccttgaaaagtctcagtaggcataccagtaattccttgtatcatcctcacatgtcttccctcagcattt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
36330641 |
actcatcatcaacttcttattctctgcattaccttgaaaagtctcagtaggcataccagtaattccttctatcatcctcacatgtcttccctcagcattt |
36330740 |
T |
|
| Q |
318 |
gcatccctctttgttccaatgtaacaatcatcgtcattctcgaactcattatcagattgtacattctcatcctaa------aaatagaaatagaagggat |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
36330741 |
gcatccctctttgttccaatgtaacaatcatcgtcattctcgaactcattatcagattgtacattctcatcctaaaaatagaaatagaaatagaagggat |
36330840 |
T |
|
| Q |
412 |
gagttgcctgaaacatgaataattatattggcttatttgactttatcgtagtttatacatatgatcgattaatgataattacttaacgaaactatttcta |
511 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
36330841 |
gagttgcctgaaacatgaagaattatattggcttatttgactttatcgtagtttatacatatgatcgattaatgataattacttaaggaaactatttcta |
36330940 |
T |
|
| Q |
512 |
tccaaacagagcgttaaaaggaaaagctaccttgaaatgacaaggaatgcgatcctttacggaaacagggtcgtagcgcttattcttcatagactcttcc |
611 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36330941 |
tccaaacagagcgttaaaaggaaaagctaccttgaaatgagaaggaatgcgatcctttacggaaacagggtcgtagcgcttattcttcatagactcttcc |
36331040 |
T |
|
| Q |
612 |
tctgcatcttgttcctcgtattcata---aacatcagtggtggcttcatcgaaatggacattggtttgaatctgtttgttcaaagatgaaggcaaacgag |
708 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
36331041 |
tctgcatcttgttcctcgtattcataaacaacatcagtggtggcttcatcgaaatggacattggtttgaatctgtttgttcaaagatgaaggcgaacgag |
36331140 |
T |
|
| Q |
709 |
gattggttttcgactttttacttcggaggttggtgccgttcatctgttttcgtttcatttctgtc |
773 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
36331141 |
gattggttttcgactttttacttcggaggttggtgtcgttcatctgttttcgtttcttttctgtc |
36331205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 87
Target Start/End: Original strand, 44369556 - 44369613
Alignment:
| Q |
30 |
accttcctttctaccttggcttgatcagcctctggaagtggtgtatgcatagttctag |
87 |
Q |
| |
|
||||||||||| ||||| |||||||| |||| ||||||||||| ||| | |||||||| |
|
|
| T |
44369556 |
accttcctttccaccttcgcttgatctgcctttggaagtggtgcatgaacagttctag |
44369613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 52929621 - 52929692
Alignment:
| Q |
30 |
accttcctttctaccttggcttgatcagcctctggaagtggtgtatgcatagttctagcattcttctcaatt |
101 |
Q |
| |
|
||||||||||||||||| |||||||| |||| ||||||||||| ||| | |||||||| | | ||||||||| |
|
|
| T |
52929621 |
accttcctttctacctttgcttgatctgcctttggaagtggtgcatgaacagttctagaactattctcaatt |
52929692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 87
Target Start/End: Complemental strand, 20237921 - 20237864
Alignment:
| Q |
30 |
accttcctttctaccttggcttgatcagcctctggaagtggtgtatgcatagttctag |
87 |
Q |
| |
|
||||||||||| ||||| |||||||| |||| ||||||||||| ||| | |||||||| |
|
|
| T |
20237921 |
accttcctttccaccttcgcttgatctgcctttggaagtggtgcatgaacagttctag |
20237864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University