View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14038_low_30 (Length: 308)
Name: NF14038_low_30
Description: NF14038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14038_low_30 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 26 - 308
Target Start/End: Complemental strand, 47250175 - 47249892
Alignment:
| Q |
26 |
tgattccaatttgaataagccggttcataccaaaatcaatgccaaacgtgacaatcaacagattattcagccttatgtatctgatatctctgattatctt |
125 |
Q |
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| T |
47250175 |
tgattccaatttgaataagccggttcataccaaaatcaatgccaaacgtgacaatcaacatattattcagccttatgtatctgatatctctgattatctt |
47250076 |
T |
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| Q |
126 |
cgcacaatggaggtaatctctcttcttgataaactgttattctttttcctcaaatcaatttgtta-tttatttacaatttctgggtgtttaaatttattt |
224 |
Q |
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| T |
47250075 |
cgcacaatggaggtaatctctcttcttgataaactgttattctttttactcaaatcaatttgttattttatttacaatttctgggtgtttaaatttattt |
47249976 |
T |
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| Q |
225 |
attgaatgtttatcagatgcagaaaaagagaagaccaatggttggttatcttgagaatgttcagagaggcatttcatcaaacat |
308 |
Q |
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| T |
47249975 |
attgaatgtttatcagatgcagaaaaagagaagaccaatggttggttatcttgagaatgttcagagaggcatttcatcaaacat |
47249892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 47243126 - 47243063
Alignment:
| Q |
245 |
agaaaaagagaagaccaatggttggttatcttgagaatgttcagagaggcatttcatcaaacat |
308 |
Q |
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| T |
47243126 |
agaaaaagagaagaccaatgtttggttatatggagaatgttcaaagaggcattacatcaaacat |
47243063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 293
Target Start/End: Complemental strand, 47254402 - 47254335
Alignment:
| Q |
226 |
ttgaatgtttatcagatgcagaaaaagagaagaccaatggttggttatcttgagaatgttcagagagg |
293 |
Q |
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| T |
47254402 |
ttgattgtttctcaggttcagaaaaagagaagaccaatgattggttatattgagaaagttcaaagagg |
47254335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 141
Target Start/End: Complemental strand, 47254548 - 47254463
Alignment:
| Q |
56 |
caaaatcaatgccaaacgtgacaatcaacagattattcagccttatgtatctgatatctctgattatcttcgcacaatggaggtaa |
141 |
Q |
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| T |
47254548 |
caaaatcaatgcaaaatctgattatgaagagatttttgagtcttatgcatctgatatctccaactatcttcgcacaatggaggtaa |
47254463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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