View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14038_low_31 (Length: 307)
Name: NF14038_low_31
Description: NF14038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14038_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 47 - 284
Target Start/End: Complemental strand, 26327744 - 26327507
Alignment:
| Q |
47 |
gagggaagggtgaattcacataccaaggaagtcggttaaaactctaccgtcggagaatctcccaactggttttccaggaaaggttatgccataaggtact |
146 |
Q |
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| T |
26327744 |
gagggaagggtgaattcacataccaaggaagtcggttaaaactctaccgtcggagaatctcccaactggttttccgggaaaggttataccataaggtact |
26327645 |
T |
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| Q |
147 |
ttccatgaatcaaatatggtttttatggagttgccggtatcaacatacgaatctccaaaaacaaacaannnnnnngaaggatgattgagatggcgagtgg |
246 |
Q |
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| T |
26327644 |
ttccatgaatcaaatatggtttttatggagttgccggtatcaacatacgaatctccaaaaacaaacaatttttttgaaggatgattgagatggcgagtgg |
26327545 |
T |
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| Q |
247 |
cctcaacttgcagctccatttgtcctataacaataaac |
284 |
Q |
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| T |
26327544 |
cctcaacttgcatctccatttgtcctataacaataaac |
26327507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 47 - 273
Target Start/End: Complemental strand, 26335696 - 26335470
Alignment:
| Q |
47 |
gagggaagggtgaattcacataccaaggaagtcggttaaaactctaccgtcggagaatctcccaactggttttccaggaaaggttatgccataaggtact |
146 |
Q |
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| T |
26335696 |
gagggaagggtgaattcacataccaaggaagtcagttaaaactatgccgtcggagaatcttccggacggctttcggggaaaggttatgccatatggggct |
26335597 |
T |
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| Q |
147 |
ttccatgaatcaaatatggtttttatggagttgccggtatcaacatacgaatctccaaaaacaaacaannnnnnngaaggatgattgagatggcgagtgg |
246 |
Q |
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| T |
26335596 |
ctccatgaaccggatataggttttatggtgttgccggtatcaacatacgagtctccgaaaacaaacaatttttttgaaggatgattgagatggcgagtgg |
26335497 |
T |
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| Q |
247 |
cctcaacttgcagctccatttgtccta |
273 |
Q |
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| T |
26335496 |
cctcaacttgcatatccatttgtccta |
26335470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 67 - 214
Target Start/End: Complemental strand, 26321184 - 26321037
Alignment:
| Q |
67 |
taccaaggaagtcggttaaaactctaccgtcggagaatctcccaactggttttccaggaaaggttatgccataaggtactttccatgaatcaaatatggt |
166 |
Q |
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|||||| |||||| ||||||||||||||||| |||||||| || | |||||||| ||||||||||||||||||||| ||||||||||| || | | | |
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| T |
26321184 |
taccaatgaagtcagttaaaactctaccgtccgagaatcttcctgcaggttttccgggaaaggttatgccataaggttctttccatgaaccaggtttact |
26321085 |
T |
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| Q |
167 |
ttttatggagttgccggtatcaacatacgaatctccaaaaacaaacaa |
214 |
Q |
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| T |
26321084 |
tttttggctgttgccggtatcaacatacgagtctccgaaaacgaacaa |
26321037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 307
Target Start/End: Original strand, 26327480 - 26327508
Alignment:
| Q |
279 |
ataaactaattaaatgtacatcttatggt |
307 |
Q |
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| T |
26327480 |
ataaactaattaaatgtacatcttatggt |
26327508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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