View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14038_low_32 (Length: 298)
Name: NF14038_low_32
Description: NF14038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14038_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 12 - 279
Target Start/End: Complemental strand, 48205753 - 48205486
Alignment:
| Q |
12 |
aatactcaattagcaatcgaagtatttgtaatattagtctgaacctgagactaacaactgattccaaacacgtcaaaatcctccaaagaatatgatctcc |
111 |
Q |
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| T |
48205753 |
aatactcaattagcaatcgaagtatttgtaatattagtctgaacctgagactaacaactgattccaagcacgtcaaaatcctccaaagaatatgatctcc |
48205654 |
T |
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| Q |
112 |
tgtatgtttattaatttccagatagaaatctcttattctgctactttgaaggttgaatatttgaattactccaagttgatggagaagcatgttagtgata |
211 |
Q |
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| T |
48205653 |
tgtatgtttattaatttccagatacaaatctcttattctgctactttgaaggttgaatatttgaattactccaagttgatggagaagcatgttagtgata |
48205554 |
T |
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| Q |
212 |
aggagaagccaatgattctattgcaaaaaagtgtgaagaagcttcactttgggagctgggaagagaaa |
279 |
Q |
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| T |
48205553 |
aggagaagccaatgattctattgcaaagaagtgtgaagaagcttcactttgggagctgggaagagaaa |
48205486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 159 - 279
Target Start/End: Complemental strand, 26982371 - 26982248
Alignment:
| Q |
159 |
gaaggttgaatat-ttgaattactccaagttgatggag-aagcatgttagtgataaggagaagccaatgattctattgcaaaaaa-gtgtgaagaagctt |
255 |
Q |
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| T |
26982371 |
gaaggttgaatatcttgaattagtccaaggtgatggaacaagcatagcagtcataaagaggtgccaatgattgtattgcaaagattgtgtgaagaagctt |
26982272 |
T |
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| Q |
256 |
cactttgggagctgggaagagaaa |
279 |
Q |
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| T |
26982271 |
cactttgggagctgggaagagaaa |
26982248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 159 - 279
Target Start/End: Original strand, 26999047 - 26999170
Alignment:
| Q |
159 |
gaaggttgaatat-ttgaattactccaagttgat-ggagaagcatgttagtgataaggagaagccaatgattctattgcaaaaaa-gtgtgaagaagctt |
255 |
Q |
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|||| |||||||| |||||||| |||||| |||| ||| |||||| ||| |||||||| |||| ||||| ||||||||| | |||||||||||||| |
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| T |
26999047 |
gaagattgaatatcttgaattagtccaaggtgataggacaagcatagcagtcataaggaggtgccagtgattgtattgcaaagattgtgtgaagaagctt |
26999146 |
T |
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| Q |
256 |
cactttgggagctgggaagagaaa |
279 |
Q |
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| T |
26999147 |
cactttgggagctgggaagagaaa |
26999170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 159 - 279
Target Start/End: Original strand, 26984972 - 26985095
Alignment:
| Q |
159 |
gaaggttgaatat-ttgaattactccaagttgat-ggagaagcatgttagtgataaggagaagccaatgattctattgcaaaaaa-gtgtgaagaagctt |
255 |
Q |
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|||| |||||||| |||||||| |||||| |||| ||| |||||| ||| |||||||| |||| ||||| ||||||||| | |||||||||||||| |
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| T |
26984972 |
gaagattgaatatcttgaattagtccaaggtgataggacaagcatagcagtcataaggaggtgccagtgattgtattgcaaagattgtgtgaagaagctt |
26985071 |
T |
|
| Q |
256 |
cactttgggagctgggaagagaaa |
279 |
Q |
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||||||||||||||||||| |||| |
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| T |
26985072 |
cactttgggagctgggaagtgaaa |
26985095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 119
Target Start/End: Original strand, 34493499 - 34493552
Alignment:
| Q |
66 |
caactgattccaaacacgtcaaaatcctccaaagaatatgatctcctgtatgtt |
119 |
Q |
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| T |
34493499 |
caactgatttcaaacacatcaaaatcttcccatgaatatgatctcttgtatgtt |
34493552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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