View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14038_low_37 (Length: 266)

Name: NF14038_low_37
Description: NF14038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14038_low_37
NF14038_low_37
[»] chr6 (5 HSPs)
chr6 (11-207)||(13699257-13699442)
chr6 (199-250)||(1258457-1258508)
chr6 (206-250)||(7678664-7678708)
chr6 (211-250)||(8745435-8745474)
chr6 (205-250)||(1256711-1256756)
[»] chr1 (11 HSPs)
chr1 (206-252)||(50317065-50317111)
chr1 (206-250)||(16673273-16673317)
chr1 (207-250)||(13211129-13211172)
chr1 (211-250)||(44268891-44268930)
chr1 (205-250)||(33257878-33257923)
chr1 (205-250)||(33278050-33278095)
chr1 (211-250)||(46604442-46604481)
chr1 (204-250)||(10708026-10708072)
chr1 (211-249)||(19251180-19251218)
chr1 (213-250)||(24438965-24439002)
chr1 (211-252)||(44269089-44269130)
[»] chr8 (9 HSPs)
chr8 (211-252)||(2552410-2552451)
chr8 (211-250)||(3158054-3158093)
chr8 (205-250)||(39884613-39884658)
chr8 (211-250)||(15279650-15279689)
chr8 (211-250)||(15460019-15460058)
chr8 (211-250)||(25264343-25264382)
chr8 (211-250)||(39886093-39886132)
chr8 (205-250)||(22714066-22714111)
chr8 (205-249)||(1650228-1650272)
[»] chr7 (14 HSPs)
chr7 (205-250)||(40028454-40028499)
chr7 (207-249)||(11671304-11671346)
chr7 (208-250)||(21016235-21016277)
chr7 (211-252)||(21715075-21715116)
chr7 (205-250)||(31393676-31393721)
chr7 (202-250)||(32882732-32882779)
chr7 (211-250)||(13420303-13420342)
chr7 (211-250)||(37133666-37133705)
chr7 (211-250)||(45277984-45278023)
chr7 (211-249)||(40030047-40030085)
chr7 (211-252)||(15136954-15136995)
chr7 (206-250)||(8230068-8230112)
chr7 (206-250)||(25008090-25008134)
chr7 (206-250)||(31392056-31392100)
[»] chr4 (20 HSPs)
chr4 (205-250)||(10338187-10338232)
chr4 (208-249)||(55017740-55017781)
chr4 (206-250)||(38157018-38157062)
chr4 (211-250)||(24919055-24919094)
chr4 (207-250)||(54534977-54535020)
chr4 (205-250)||(48713479-48713524)
chr4 (206-250)||(18597871-18597915)
chr4 (210-250)||(22309155-22309195)
chr4 (206-250)||(44251603-44251647)
chr4 (206-246)||(54536718-54536758)
chr4 (211-250)||(10337107-10337146)
chr4 (211-250)||(19994501-19994540)
chr4 (211-250)||(19996071-19996110)
chr4 (206-249)||(42889828-42889871)
chr4 (216-250)||(9561854-9561888)
chr4 (204-250)||(42978936-42978982)
chr4 (211-249)||(48711861-48711899)
chr4 (206-250)||(33607466-33607510)
chr4 (206-250)||(42977196-42977240)
chr4 (202-250)||(55948970-55949018)
[»] chr3 (12 HSPs)
chr3 (205-250)||(33734519-33734564)
chr3 (209-250)||(22942337-22942378)
chr3 (204-249)||(32615664-32615709)
chr3 (201-250)||(40499269-40499318)
chr3 (206-250)||(30700294-30700338)
chr3 (206-250)||(33732963-33733007)
chr3 (206-250)||(48566994-48567038)
chr3 (211-250)||(41083288-41083327)
chr3 (204-250)||(31656949-31656995)
chr3 (207-248)||(31017762-31017803)
chr3 (206-250)||(8391399-8391443)
chr3 (206-250)||(41081800-41081844)
[»] chr5 (5 HSPs)
chr5 (206-250)||(16308563-16308607)
chr5 (211-249)||(18201363-18201401)
chr5 (211-249)||(27756803-27756841)
chr5 (211-252)||(36619547-36619588)
chr5 (206-250)||(38624714-38624758)
[»] chr2 (10 HSPs)
chr2 (206-250)||(13947746-13947790)
chr2 (206-250)||(14088935-14088979)
chr2 (211-250)||(44465107-44465146)
chr2 (206-250)||(1840155-1840199)
chr2 (206-250)||(6842713-6842757)
chr2 (206-250)||(28563374-28563418)
chr2 (211-250)||(22060497-22060536)
chr2 (207-238)||(44419864-44419895)
chr2 (204-250)||(45499301-45499347)
chr2 (213-250)||(16142231-16142268)
[»] scaffold0524 (1 HSPs)
scaffold0524 (208-250)||(7698-7740)


Alignment Details
Target: chr6 (Bit Score: 151; Significance: 6e-80; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 11 - 207
Target Start/End: Complemental strand, 13699442 - 13699257
Alignment:
Q  11 cagagaggatctgagtcgtccaaatatcactgatgatcataaaattgagacaatatatacacccaaataaataatgacgaaaacaaaggtaccaattgag 110  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13699442 cagagaggatctgagtcgtccaaatatcaccgatgatcataaaattgagacaatatatacacccaaataaataatgacgaaaacaaaggtaccaattgag 13699343  T
Q  111 tttgttttgatatgtatccatcatccaataatcattcaattgtcatgtcttattttcattgaaattcattgcataataaattcaaatgttaatataa 207  Q
    |||||||||||||||||||||||||           ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  13699342 tttgttttgatatgtatccatcatc-----------caattgtcatgtcttattttcatagaaattcattgcataataaattcaaatgttaatataa 13699257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 199 - 250
Target Start/End: Complemental strand, 1258508 - 1258457
Alignment:
Q  199 ttaatataaggtttaaatatgtaaatcgtccctgtaagtttgcgtgtttttg 250  Q
    |||| |||||| ||||||||||||||||||||||||| || |||||||||||    
T  1258508 ttaaaataaggcttaaatatgtaaatcgtccctgtaatttggcgtgtttttg 1258457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 7678708 - 7678664
Alignment:
Q  206 aaggtttaaatatgtaaatcgtccctgtaagtttgcgtgtttttg 250  Q
    |||| ||||||||||||||||||||||||| || |||||||||||    
T  7678708 aaggcttaaatatgtaaatcgtccctgtaatttggcgtgtttttg 7678664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 250
Target Start/End: Original strand, 8745435 - 8745474
Alignment:
Q  211 ttaaatatgtaaatcgtccctgtaagtttgcgtgtttttg 250  Q
    ||||||||||||||||||||||||| || |||||||||||    
T  8745435 ttaaatatgtaaatcgtccctgtaatttggcgtgtttttg 8745474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 1256711 - 1256756
Alignment:
Q  205 taaggtttaaatatgtaaatcgtccctgtaagtttgcgtgtttttg 250  Q
    ||||| ||||||||||||||||||| ||||| || |||||||||||    
T  1256711 taaggcttaaatatgtaaatcgtccttgtaatttggcgtgtttttg 1256756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 206 - 252
Target Start/End: Complemental strand, 50317111 - 50317065
Alignment:
Q  206 aaggtttaaatatgtaaatcgtccctgtaagtttgcgtgtttttgat 252  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||    
T  50317111 aaggtttaaatatgtaaatcgtccatgtaagttcgcgtgtttttgat 50317065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 16673317 - 16673273
Alignment:
Q  206 aaggtttaaatatgtaaatcgtccctgtaagtttgcgtgtttttg 250  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||    
T  16673317 aaggcttaaatatgtaaatcgtccctgtaattttgcgtgtttttg 16673273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 207 - 250
Target Start/End: Complemental strand, 13211172 - 13211129
Alignment:
Q  207 aggtttaaatatgtaaatcgtccctgtaagtttgcgtgtttttg 250  Q
    ||||||||||||||||||| |||||||||||||| |||||||||    
T  13211172 aggtttaaatatgtaaatcttccctgtaagtttgtgtgtttttg 13211129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 211 - 250
Target Start/End: Original strand, 44268891 - 44268930
Alignment:
Q  211 ttaaatatgtaaatcgtccctgtaagtttgcgtgtttttg 250  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  44268891 ttaaatatgtaaatcgtccctgtaagttcgcgtgtttttg 44268930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 33257878 - 33257923
Alignment:
Q  205 taaggtttaaatatgtaaatcgtccctgtaagtttgcgtgtttttg 250  Q
    ||||| ||||||||||||||||||||||||| || |||||||||||    
T  33257878 taaggcttaaatatgtaaatcgtccctgtaatttggcgtgtttttg 33257923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 33278050 - 33278095
Alignment:
Q  205 taaggtttaaatatgtaaatcgtccctgtaagtttgcgtgtttttg 250  Q
    ||||| ||||||||||||||||||||||||| || |||||||||||    
T  33278050 taaggcttaaatatgtaaatcgtccctgtaatttggcgtgtttttg 33278095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 250
Target Start/End: Original strand, 46604442 - 46604481
Alignment:
Q  211 ttaaatatgtaaatcgtccctgtaagtttgcgtgtttttg 250  Q
    |||||||||||||  |||||||||||||||||||||||||    
T  46604442 ttaaatatgtaaaaggtccctgtaagtttgcgtgtttttg 46604481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 250
Target Start/End: Original strand, 10708026 - 10708072
Alignment:
Q  204 ataaggtttaaatatgtaaatcgtccctgtaagtttgcgtgtttttg 250  Q
    |||||| |||||||||||||  ||||||||||||| |||||||||||    
T  10708026 ataaggcttaaatatgtaaaaagtccctgtaagttcgcgtgtttttg 10708072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 249
Target Start/End: Complemental strand, 19251218 - 19251180
Alignment:
Q  211 ttaaatatgtaaatcgtccctgtaagtttgcgtgttttt 249  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  19251218 ttaaatatgtaaatcgtccctgtatttttgcgtgttttt 19251180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 213 - 250
Target Start/End: Complemental strand, 24439002 - 24438965
Alignment:
Q  213 aaatatgtaaatcgtccctgtaagtttgcgtgtttttg 250  Q
    ||||||||||||||||||||||| || |||||||||||    
T  24439002 aaatatgtaaatcgtccctgtaaattcgcgtgtttttg 24438965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 252
Target Start/End: Complemental strand, 44269130 - 44269089
Alignment:
Q  211 ttaaatatgtaaatcgtccctgtaagtttgcgtgtttttgat 252  Q
    |||||||||||||||||| |||||| || |||||||||||||    
T  44269130 ttaaatatgtaaatcgtctctgtaaattcgcgtgtttttgat 44269089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 252
Target Start/End: Original strand, 2552410 - 2552451
Alignment:
Q  211 ttaaatatgtaaatcgtccctgtaagtttgcgtgtttttgat 252  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  2552410 ttaaatatgtaaatcgtctctgtaagtttgcgtgtttttgat 2552451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 3158093 - 3158054
Alignment:
Q  211 ttaaatatgtaaatcgtccctgtaagtttgcgtgtttttg 250  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  3158093 ttaaatatgtaaatcgtccctgtaagttcgcgtgtttttg 3158054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 39884613 - 39884658
Alignment:
Q  205 taaggtttaaatatgtaaatcgtccctgtaagtttgcgtgtttttg 250  Q
    ||||| |||||||||||||| ||||||||||||| |||||||||||    
T  39884613 taaggcttaaatatgtaaatggtccctgtaagttcgcgtgtttttg 39884658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 15279689 - 15279650
Alignment:
Q  211 ttaaatatgtaaatcgtccctgtaagtttgcgtgtttttg 250  Q
    ||||||||||||||||||| |||||||| |||||||||||    
T  15279689 ttaaatatgtaaatcgtccttgtaagttcgcgtgtttttg 15279650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 15460058 - 15460019
Alignment:
Q  211 ttaaatatgtaaatcgtccctgtaagtttgcgtgtttttg 250  Q
    ||||||||||||||||||| |||||||| |||||||||||    
T  15460058 ttaaatatgtaaatcgtccttgtaagttcgcgtgtttttg 15460019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 250
Target Start/End: Original strand, 25264343 - 25264382
Alignment:
Q  211 ttaaatatgtaaatcgtccctgtaagtttgcgtgtttttg 250  Q
    ||||||||||||||||||||||||| || |||||||||||    
T  25264343 ttaaatatgtaaatcgtccctgtaatttggcgtgtttttg 25264382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 39886132 - 39886093
Alignment:
Q  211 ttaaatatgtaaatcgtccctgtaagtttgcgtgtttttg 250  Q
    |||||||||||||| ||||||||||||| |||||||||||    
T  39886132 ttaaatatgtaaatggtccctgtaagttcgcgtgtttttg 39886093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 22714111 - 22714066
Alignment:
Q  205 taaggtttaaatatgtaaatcgtccctgtaagtttgcgtgtttttg 250  Q
    ||||| |||||||||||||||| ||||||||||| | |||||||||    
T  22714111 taaggcttaaatatgtaaatcgcccctgtaagttcgtgtgtttttg 22714066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 1650272 - 1650228
Alignment:
Q  205 taaggtttaaatatgtaaatcgtccctgtaagtttgcgtgttttt 249  Q
    ||||| ||||||||||||| ||||| |||||||| ||||||||||    
T  1650272 taaggcttaaatatgtaaaccgtccttgtaagttcgcgtgttttt 1650228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 40028454 - 40028499
Alignment:
Q  205 taaggtttaaatatgtaaatcgtccctgtaagtttgcgtgtttttg 250  Q
    ||||||||||||||||||||||||||||||| || |||||||||||    
T  40028454 taaggtttaaatatgtaaatcgtccctgtaatttggcgtgtttttg 40028499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 207 - 249
Target Start/End: Complemental strand, 11671346 - 11671304
Alignment:
Q  207 aggtttaaatatgtaaatcgtccctgtaagtttgcgtgttttt 249  Q
    |||||||||||||||||||||||| ||||||| ||||||||||    
T  11671346 aggtttaaatatgtaaatcgtccccgtaagttcgcgtgttttt 11671304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 208 - 250
Target Start/End: Original strand, 21016235 - 21016277
Alignment:
Q  208 ggtttaaatatgtaaatcgtccctgtaagtttgcgtgtttttg 250  Q
    ||||||||||||| |||||||||| ||||||||||||||||||    
T  21016235 ggtttaaatatgtgaatcgtccctataagtttgcgtgtttttg 21016277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 252
Target Start/End: Original strand, 21715075 - 21715116
Alignment:
Q  211 ttaaatatgtaaatcgtccctgtaagtttgcgtgtttttgat 252  Q
    ||||||||||||||||||||||||| || |||||||||||||    
T  21715075 ttaaatatgtaaatcgtccctgtaatttggcgtgtttttgat 21715116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 31393721 - 31393676
Alignment:
Q  205 taaggtttaaatatgtaaatcgtccctgtaagtttgcgtgtttttg 250  Q
    ||||| ||||||||||||||||||||||||| || |||||||||||    
T  31393721 taaggcttaaatatgtaaatcgtccctgtaatttggcgtgtttttg 31393676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 202 - 250
Target Start/End: Complemental strand, 32882779 - 32882732
Alignment:
Q  202 atataaggtttaaatatgtaaatcgtccctgtaagtttgcgtgtttttg 250  Q
    |||||||| ||||||||||||||||||||||||| ||||| ||||||||    
T  32882779 atataaggcttaaatatgtaaatcgtccctgtaa-tttgcatgtttttg 32882732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 13420342 - 13420303
Alignment:
Q  211 ttaaatatgtaaatcgtccctgtaagtttgcgtgtttttg 250  Q
    |||||||||||||| | |||||||||||||||||||||||    
T  13420342 ttaaatatgtaaatggcccctgtaagtttgcgtgtttttg 13420303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 37133705 - 37133666
Alignment:
Q  211 ttaaatatgtaaatcgtccctgtaagtttgcgtgtttttg 250  Q
    |||||||||||||||||||| ||||||| |||||||||||    
T  37133705 ttaaatatgtaaatcgtccccgtaagttcgcgtgtttttg 37133666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 45278023 - 45277984
Alignment:
Q  211 ttaaatatgtaaatcgtccctgtaagtttgcgtgtttttg 250  Q
    ||||||||||||||||||||||||| || |||||||||||    
T  45278023 ttaaatatgtaaatcgtccctgtaatttggcgtgtttttg 45277984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 249
Target Start/End: Complemental strand, 40030085 - 40030047
Alignment:
Q  211 ttaaatatgtaaatcgtccctgtaagtttgcgtgttttt 249  Q
    ||||||||||||||||||||||||| || ||||||||||    
T  40030085 ttaaatatgtaaatcgtccctgtaatttggcgtgttttt 40030047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 252
Target Start/End: Complemental strand, 15136995 - 15136954
Alignment:
Q  211 ttaaatatgtaaatcgtccctgtaagtttgcgtgtttttgat 252  Q
    |||||||| |||||||||||||||| || |||||||||||||    
T  15136995 ttaaatatataaatcgtccctgtaaattcgcgtgtttttgat 15136954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 8230068 - 8230112
Alignment:
Q  206 aaggtttaaatatgtaaatcgtccctgtaagtttgcgtgtttttg 250  Q
    |||| ||||||||||||||||||||||||| || | |||||||||    
T  8230068 aaggcttaaatatgtaaatcgtccctgtaatttggtgtgtttttg 8230112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 25008090 - 25008134
Alignment:
Q  206 aaggtttaaatatgtaaatcgtccctgtaagtttgcgtgtttttg 250  Q
    |||| ||||||||||||| ||||||||||| || |||||||||||    
T  25008090 aaggcttaaatatgtaaaacgtccctgtaatttcgcgtgtttttg 25008134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 31392056 - 31392100
Alignment:
Q  206 aaggtttaaatatgtaaatcgtccctgtaagtttgcgtgtttttg 250  Q
    |||| ||||||||||||||||||||||||| ||  ||||||||||    
T  31392056 aaggcttaaatatgtaaatcgtccctgtaatttgacgtgtttttg 31392100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 10338232 - 10338187
Alignment:
Q  205 taaggtttaaatatgtaaatcgtccctgtaagtttgcgtgtttttg 250  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||||    
T  10338232 taaggtttaaatatgtaaatcgtccatgtaattttgcgtgtttttg 10338187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 249
Target Start/End: Original strand, 55017740 - 55017781
Alignment:
Q  208 ggtttaaatatgtaaatcgtccctgtaagtttgcgtgttttt 249  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  55017740 ggtttaaatatgtaaatcgtccctgtaagttcgcgtgttttt 55017781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 38157018 - 38157062
Alignment:
Q  206 aaggtttaaatatgtaaatcgtccctgtaagtttgcgtgtttttg 250  Q
    |||||||||||||||||||| |||||||||||| |||||||||||    
T  38157018 aaggtttaaatatgtaaatcatccctgtaagttcgcgtgtttttg 38157062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 211 - 250
Target Start/End: Original strand, 24919055 - 24919094
Alignment:
Q  211 ttaaatatgtaaatcgtccctgtaagtttgcgtgtttttg 250  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  24919055 ttaaatatgtaaatcgtacctgtaagtttgcgtgtttttg 24919094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 207 - 250
Target Start/End: Original strand, 54534977 - 54535020
Alignment:
Q  207 aggtttaaatatgtaaatcgtccctgtaagtttgcgtgtttttg 250  Q
    ||||||||||||||||||||||| |||||||| |||||||||||    
T  54534977 aggtttaaatatgtaaatcgtccatgtaagttcgcgtgtttttg 54535020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 48713524 - 48713479
Alignment:
Q  205 taaggtttaaatatgtaaatcgtccctgtaagtttgcgtgtttttg 250  Q
    ||||| ||||||||||||||||||||||||| || |||||||||||    
T  48713524 taaggcttaaatatgtaaatcgtccctgtaatttggcgtgtttttg 48713479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 18597915 - 18597871
Alignment:
Q  206 aaggtttaaatatgtaaatcgtccctgtaagtttgcgtgtttttg 250  Q
    |||| ||||||||||||||||||||||||| || |||||||||||    
T  18597915 aaggcttaaatatgtaaatcgtccctgtaatttggcgtgtttttg 18597871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 210 - 250
Target Start/End: Complemental strand, 22309195 - 22309155
Alignment:
Q  210 tttaaatatgtaaatcgtccctgtaagtttgcgtgtttttg 250  Q
    ||||||||||||||| ||||||||||||| |||||||||||    
T  22309195 tttaaatatgtaaatggtccctgtaagttcgcgtgtttttg 22309155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 44251603 - 44251647
Alignment:
Q  206 aaggtttaaatatgtaaatcgtccctgtaagtttgcgtgtttttg 250  Q
    |||| ||||||||||||||||||||||||| || |||||||||||    
T  44251603 aaggcttaaatatgtaaatcgtccctgtaatttggcgtgtttttg 44251647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 246
Target Start/End: Complemental strand, 54536758 - 54536718
Alignment:
Q  206 aaggtttaaatatgtaaatcgtccctgtaagtttgcgtgtt 246  Q
    |||||||||||||||||||||||||||||| || |||||||    
T  54536758 aaggtttaaatatgtaaatcgtccctgtaaattcgcgtgtt 54536718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 250
Target Start/End: Original strand, 10337107 - 10337146
Alignment:
Q  211 ttaaatatgtaaatcgtccctgtaagtttgcgtgtttttg 250  Q
    ||||||||||||||||||||||||| || |||||||||||    
T  10337107 ttaaatatgtaaatcgtccctgtaatttggcgtgtttttg 10337146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 250
Target Start/End: Original strand, 19994501 - 19994540
Alignment:
Q  211 ttaaatatgtaaatcgtccctgtaagtttgcgtgtttttg 250  Q
    ||||||||||||||||||||||||| || |||||||||||    
T  19994501 ttaaatatgtaaatcgtccctgtaatttggcgtgtttttg 19994540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 19996110 - 19996071
Alignment:
Q  211 ttaaatatgtaaatcgtccctgtaagtttgcgtgtttttg 250  Q
    ||||||||||||||||||||||||| || |||||||||||    
T  19996110 ttaaatatgtaaatcgtccctgtaatttggcgtgtttttg 19996071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 249
Target Start/End: Complemental strand, 42889871 - 42889828
Alignment:
Q  206 aaggtttaaatatgtaaatcgtccctgtaagtttgcgtgttttt 249  Q
    |||| ||||||||||||||||||||||||||||  |||||||||    
T  42889871 aaggcttaaatatgtaaatcgtccctgtaagttcacgtgttttt 42889828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 250
Target Start/End: Original strand, 9561854 - 9561888
Alignment:
Q  216 tatgtaaatcgtccctgtaagtttgcgtgtttttg 250  Q
    ||||||||||||||||||||||| |||||||||||    
T  9561854 tatgtaaatcgtccctgtaagttcgcgtgtttttg 9561888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 250
Target Start/End: Complemental strand, 42978982 - 42978936
Alignment:
Q  204 ataaggtttaaatatgtaaatcgtccctgtaagtttgcgtgtttttg 250  Q
    |||||| ||||||||||||||||||| ||||| || |||||||||||    
T  42978982 ataaggcttaaatatgtaaatcgtccttgtaatttggcgtgtttttg 42978936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 249
Target Start/End: Original strand, 48711861 - 48711899
Alignment:
Q  211 ttaaatatgtaaatcgtccctgtaagtttgcgtgttttt 249  Q
    ||||||||||||||||||| ||||| |||||||||||||    
T  48711861 ttaaatatgtaaatcgtccttgtaattttgcgtgttttt 48711899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 33607466 - 33607510
Alignment:
Q  206 aaggtttaaatatgtaaatcgtccctgtaagtttgcgtgtttttg 250  Q
    ||||||||||||||||||  ||| ||||||||| |||||||||||    
T  33607466 aaggtttaaatatgtaaaaggtctctgtaagttcgcgtgtttttg 33607510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 42977196 - 42977240
Alignment:
Q  206 aaggtttaaatatgtaaatcgtccctgtaagtttgcgtgtttttg 250  Q
    |||| ||||||||||||||||||| ||||| || |||||||||||    
T  42977196 aaggcttaaatatgtaaatcgtccttgtaatttggcgtgtttttg 42977240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 250
Target Start/End: Complemental strand, 55949018 - 55948970
Alignment:
Q  202 atataaggtttaaatatgtaaatcgtccctgtaagtttgcgtgtttttg 250  Q
    |||| ||| ||||||||||||||||||| ||||| || |||||||||||    
T  55949018 atattaggcttaaatatgtaaatcgtccttgtaatttggcgtgtttttg 55948970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 33734564 - 33734519
Alignment:
Q  205 taaggtttaaatatgtaaatcgtccctgtaagtttgcgtgtttttg 250  Q
    ||||||||||||||||||||||||||||||| || |||||||||||    
T  33734564 taaggtttaaatatgtaaatcgtccctgtaatttagcgtgtttttg 33734519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 250
Target Start/End: Original strand, 22942337 - 22942378
Alignment:
Q  209 gtttaaatatgtaaatcgtccctgtaagtttgcgtgtttttg 250  Q
    |||||||||||||||||||||||||||||| || ||||||||    
T  22942337 gtttaaatatgtaaatcgtccctgtaagttcgcttgtttttg 22942378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 249
Target Start/End: Complemental strand, 32615709 - 32615664
Alignment:
Q  204 ataaggtttaaatatgtaaatcgtccctgtaagtttgcgtgttttt 249  Q
    ||||||||||||||||||||  ||||||||||||| ||||||||||    
T  32615709 ataaggtttaaatatgtaaaaggtccctgtaagttcgcgtgttttt 32615664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 250
Target Start/End: Complemental strand, 40499318 - 40499269
Alignment:
Q  201 aatataaggtttaaatatgtaaatcgtccctgtaagtttgcgtgtttttg 250  Q
    ||||||||| |||||||||||||  ||||||||||||| |||||||||||    
T  40499318 aatataaggcttaaatatgtaaaaggtccctgtaagttcgcgtgtttttg 40499269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 30700294 - 30700338
Alignment:
Q  206 aaggtttaaatatgtaaatcgtccctgtaagtttgcgtgtttttg 250  Q
    ||||||||||||||||||||||| || |||||| |||||||||||    
T  30700294 aaggtttaaatatgtaaatcgtctctttaagttcgcgtgtttttg 30700338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 33732963 - 33733007
Alignment:
Q  206 aaggtttaaatatgtaaatcgtccctgtaagtttgcgtgtttttg 250  Q
    |||| ||||||||||||||||||||||||| || |||||||||||    
T  33732963 aaggcttaaatatgtaaatcgtccctgtaatttggcgtgtttttg 33733007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 48566994 - 48567038
Alignment:
Q  206 aaggtttaaatatgtaaatcgtccctgtaagtttgcgtgtttttg 250  Q
    |||| |||||||||||||  |||||||||||||||||||||||||    
T  48566994 aaggcttaaatatgtaaaaggtccctgtaagtttgcgtgtttttg 48567038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 41083327 - 41083288
Alignment:
Q  211 ttaaatatgtaaatcgtccctgtaagtttgcgtgtttttg 250  Q
    |||||||||||||  |||||||||||||||||||||||||    
T  41083327 ttaaatatgtaaaaggtccctgtaagtttgcgtgtttttg 41083288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 250
Target Start/End: Original strand, 31656949 - 31656995
Alignment:
Q  204 ataaggtttaaatatgtaaatcgtccctgtaagtttgcgtgtttttg 250  Q
    |||||| ||||||||||||||||||||||||| || || ||||||||    
T  31656949 ataaggattaaatatgtaaatcgtccctgtaatttggcatgtttttg 31656995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 248
Target Start/End: Complemental strand, 31017803 - 31017762
Alignment:
Q  207 aggtttaaatatgtaaatcgtccctgtaagtttgcgtgtttt 248  Q
    ||||||||||||||||||||||  |||||||| |||||||||    
T  31017803 aggtttaaatatgtaaatcgtctgtgtaagttcgcgtgtttt 31017762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 8391399 - 8391443
Alignment:
Q  206 aaggtttaaatatgtaaatcgtccctgtaagtttgcgtgtttttg 250  Q
    |||| ||||||||||||| ||||||||||| || |||||||||||    
T  8391399 aaggcttaaatatgtaaaacgtccctgtaatttcgcgtgtttttg 8391443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 41081800 - 41081844
Alignment:
Q  206 aaggtttaaatatgtaaatcgtccctgtaagtttgcgtgtttttg 250  Q
    |||| |||||||||||||  ||||||||||||| |||||||||||    
T  41081800 aaggcttaaatatgtaaaaggtccctgtaagttcgcgtgtttttg 41081844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 16308563 - 16308607
Alignment:
Q  206 aaggtttaaatatgtaaatcgtccctgtaagtttgcgtgtttttg 250  Q
    |||| |||||||||||||||||||||||||||| |||||||||||    
T  16308563 aaggcttaaatatgtaaatcgtccctgtaagttcgcgtgtttttg 16308607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 211 - 249
Target Start/End: Complemental strand, 18201401 - 18201363
Alignment:
Q  211 ttaaatatgtaaatcgtccctgtaagtttgcgtgttttt 249  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  18201401 ttaaatatgtaaattgtccctgtaagtttgcgtgttttt 18201363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 249
Target Start/End: Complemental strand, 27756841 - 27756803
Alignment:
Q  211 ttaaatatgtaaatcgtccctgtaagtttgcgtgttttt 249  Q
    ||||||||||||||||||||| |||||| ||||||||||    
T  27756841 ttaaatatgtaaatcgtccctctaagttcgcgtgttttt 27756803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 252
Target Start/End: Original strand, 36619547 - 36619588
Alignment:
Q  211 ttaaatatgtaaatcgtccctgtaagtttgcgtgtttttgat 252  Q
    ||||||||||||||||||||| ||| || |||||||||||||    
T  36619547 ttaaatatgtaaatcgtccctataatttggcgtgtttttgat 36619588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 38624714 - 38624758
Alignment:
Q  206 aaggtttaaatatgtaaatcgtccctgtaagtttgcgtgtttttg 250  Q
    |||| |||||||||||||  ||||||||||||| |||||||||||    
T  38624714 aaggcttaaatatgtaaaaggtccctgtaagttcgcgtgtttttg 38624758  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 13947746 - 13947790
Alignment:
Q  206 aaggtttaaatatgtaaatcgtccctgtaagtttgcgtgtttttg 250  Q
    |||||||||||||||||||||||||||||| || |||||||||||    
T  13947746 aaggtttaaatatgtaaatcgtccctgtaatttggcgtgtttttg 13947790  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 14088935 - 14088979
Alignment:
Q  206 aaggtttaaatatgtaaatcgtccctgtaagtttgcgtgtttttg 250  Q
    |||||||||||||||||||||||||||||| || |||||||||||    
T  14088935 aaggtttaaatatgtaaatcgtccctgtaatttggcgtgtttttg 14088979  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 44465146 - 44465107
Alignment:
Q  211 ttaaatatgtaaatcgtccctgtaagtttgcgtgtttttg 250  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  44465146 ttaaatatgtaaatcgtccctgtaagttcgcgtgtttttg 44465107  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 1840155 - 1840199
Alignment:
Q  206 aaggtttaaatatgtaaatcgtccctgtaagtttgcgtgtttttg 250  Q
    |||| ||||||||||||||||||||||||| || |||||||||||    
T  1840155 aaggcttaaatatgtaaatcgtccctgtaatttggcgtgtttttg 1840199  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 6842713 - 6842757
Alignment:
Q  206 aaggtttaaatatgtaaatcgtccctgtaagtttgcgtgtttttg 250  Q
    ||||||||||||||||||  || ||||||||||||||||||||||    
T  6842713 aaggtttaaatatgtaaaaggttcctgtaagtttgcgtgtttttg 6842757  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 28563374 - 28563418
Alignment:
Q  206 aaggtttaaatatgtaaatcgtccctgtaagtttgcgtgtttttg 250  Q
    |||| ||||||||||||||||||||||||| || |||||||||||    
T  28563374 aaggcttaaatatgtaaatcgtccctgtaatttggcgtgtttttg 28563418  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 22060536 - 22060497
Alignment:
Q  211 ttaaatatgtaaatcgtccctgtaagtttgcgtgtttttg 250  Q
    |||||||||||||  |||||||||||||||||||||||||    
T  22060536 ttaaatatgtaaaaggtccctgtaagtttgcgtgtttttg 22060497  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 207 - 238
Target Start/End: Original strand, 44419864 - 44419895
Alignment:
Q  207 aggtttaaatatgtaaatcgtccctgtaagtt 238  Q
    ||||||||||||||||||||||||||||||||    
T  44419864 aggtttaaatatgtaaatcgtccctgtaagtt 44419895  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 250
Target Start/End: Original strand, 45499301 - 45499347
Alignment:
Q  204 ataaggtttaaatatgtaaatcgtccctgtaagtttgcgtgtttttg 250  Q
    |||||| |||||||||||||  ||||||||||||| |||||||||||    
T  45499301 ataaggcttaaatatgtaaaaggtccctgtaagttcgcgtgtttttg 45499347  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 213 - 250
Target Start/End: Original strand, 16142231 - 16142268
Alignment:
Q  213 aaatatgtaaatcgtccctgtaagtttgcgtgtttttg 250  Q
    ||||||||||||||||| |||||||| |||||||||||    
T  16142231 aaatatgtaaatcgtccttgtaagttcgcgtgtttttg 16142268  T

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Target: scaffold0524 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0524
Description:

Target: scaffold0524; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 250
Target Start/End: Original strand, 7698 - 7740
Alignment:
Q  208 ggtttaaatatgtaaatcgtccctgtaagtttgcgtgtttttg 250  Q
    |||||||||||||||| ||||||||||| || |||||||||||    
T  7698 ggtttaaatatgtaaaacgtccctgtaatttcgcgtgtttttg 7740  T

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