View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14038_low_38 (Length: 253)
Name: NF14038_low_38
Description: NF14038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14038_low_38 |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 11 - 220
Target Start/End: Original strand, 10857141 - 10857350
Alignment:
| Q |
11 |
cacagagggggatgaatcaggtgaagataaaaagttaatatttgaggacctccacactttgtttctaaaagatttatcaaagctaaggtgcttttaccct |
110 |
Q |
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| T |
10857141 |
cacagagggggatgaatcaggtgaagataaaaagttaatatttgaggacctccagactttgtttctaaaagatttatcaaagctaaggtgcttttaccct |
10857240 |
T |
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| Q |
111 |
gggaagttttccttgtgctttccatccttggagaaagtatccttgattcaatgcatcttgatgaaaactttctgtccagtcaacaagatagatccaacca |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||| |||| |
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| T |
10857241 |
gggaagttttccttgtgctttccatccttggagaaagtgtccttgattcaatgcatctggatgaaaactttcagtccagtcaacatgatagatccgacca |
10857340 |
T |
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| Q |
211 |
aattgtcttc |
220 |
Q |
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|||||||||| |
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| T |
10857341 |
aattgtcttc |
10857350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 11 - 216
Target Start/End: Original strand, 10888644 - 10888849
Alignment:
| Q |
11 |
cacagagggggatgaatcaggtgaagataaaaagttaatatttgaggacctccacactttgtttctaaaagatttatcaaagctaaggtgcttttaccct |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |
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| T |
10888644 |
cacagagggggatgaatcaggtgaagataaaaagttaatatttgaggacctccgcactttgtttctaaaagatttatcaaagctaaggtgcttttattct |
10888743 |
T |
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| Q |
111 |
gggaagttttccttgtgctttccatccttggagaaagtatccttgattcaatgcatcttgatgaaaactttctgtccagtcaacaagatagatccaacca |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||| |||||| ||||||||||| ||||||||||||||| |
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| T |
10888744 |
gggaagttttccttgtgctttccatccttggagaaagtgtccttgattctatgcatctcgatgaatactttcagtccagtcaacgagatagatccaacca |
10888843 |
T |
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| Q |
211 |
aattgt |
216 |
Q |
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|||||| |
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| T |
10888844 |
aattgt |
10888849 |
T |
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