View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14038_low_39 (Length: 243)

Name: NF14038_low_39
Description: NF14038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14038_low_39
NF14038_low_39
[»] chr7 (2 HSPs)
chr7 (1-240)||(42691155-42691394)
chr7 (12-75)||(29681503-29681566)
[»] chr2 (2 HSPs)
chr2 (1-205)||(37258336-37258538)
chr2 (1-75)||(13250522-13250596)
[»] chr1 (2 HSPs)
chr1 (1-205)||(29058413-29058614)
chr1 (16-79)||(30717530-30717593)
[»] chr5 (1 HSPs)
chr5 (1-79)||(10523915-10523993)
[»] chr3 (1 HSPs)
chr3 (1-75)||(49787026-49787100)
[»] chr4 (1 HSPs)
chr4 (1-77)||(19485720-19485794)


Alignment Details
Target: chr7 (Bit Score: 164; Significance: 9e-88; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 42691394 - 42691155
Alignment:
Q  1 atattcatactactcatctaaaattttaaaatgtgtcctattaatcatcacaatatctcttacgtttatattttatattannnnnnnnatcaaagaaagc 100  Q
    |||||||||| |||||| |||||||||||||||  || ||||||||||||||||||||||||| ||||||||||||||||        ||||||||||||    
T  42691394 atattcataccactcatttaaaattttaaaatggatcttattaatcatcacaatatctcttacatttatattttatattattttttttatcaaagaaagc 42691295  T
Q  101 tgaaaaactaccgtagcaatacattatcatggtgccaattaaaaagttgacatggtgctatagggaaatgtgagcacacggcaatttgcaggcgatattg 200  Q
    |  ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||| ||||||||||||||||||    
T  42691294 tagaaaactaccgtagcaatacattatcatggtgccaattaaaaagctgacatggtgctatagggaaatgtgaggacgcggtaatttgcaggcgatattg 42691195  T
Q  201 atgctttaagaattcttaaataaaatttgggtgcctttgt 240  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  42691194 atgctttaagaattcataaataaaatttgggtgcctttgt 42691155  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 29681503 - 29681566
Alignment:
Q  12 actcatctaaaattttaaaatgtgtcctattaatcatcacaatatctcttacgtttatatttta 75  Q
    |||||||||||||| ||||||  || ||||||| ||| ||||||||||| || |||||||||||    
T  29681503 actcatctaaaattctaaaataagttctattaaacattacaatatctctaacatttatatttta 29681566  T

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Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 37258336 - 37258538
Alignment:
Q  1 atattcatactactcatctaaaattttaaaatgtgtcctattaatcatcacaatatctcttacgtttatattttatattannnnnnnnatcaaagaaagc 100  Q
    |||||||||| |||| ||||||||||||||||| |    || || ||| |||||||||||||| ||||||||||||||||        ||||||||||      
T  37258336 atattcataccactcttctaaaattttaaaatggggttcatcaaacattacaatatctcttacatttatattttatattatttttt--atcaaagaaaat 37258433  T
Q  101 tgaaaaactaccgtagcaatacattatcatggtgccaattaaaaagttgacatggtgctatagggaaatgtgagcacacggcaatttgcaggcgatattg 200  Q
    |||||||||||||| ||||| ||||| || |||||||||||||||| |||||   | |||| | |||||||| | |||||||||||||| |||||||||     
T  37258434 tgaaaaactaccgttgcaatgcattaccacggtgccaattaaaaagctgacacaatactattgagaaatgtgtggacacggcaatttgctggcgatattt 37258533  T
Q  201 atgct 205  Q
    |||||    
T  37258534 atgct 37258538  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 13250522 - 13250596
Alignment:
Q  1 atattcatactactcatctaaaattttaaaatgtgtcctattaatcatcacaatatctcttacgtttatatttta 75  Q
    |||||||||| |||||||||||| | ||||||| |||| ||||| ||||||||||||||| ||  ||||||||||    
T  13250522 atattcataccactcatctaaaactctaaaatgagtcccattaaacatcacaatatctctaacacttatatttta 13250596  T

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Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 29058614 - 29058413
Alignment:
Q  1 atattcatactactcatctaaaattttaaaatgtgtcctattaatcatcacaatatctcttacgtttatattttatattannnnnnnnatcaaagaaagc 100  Q
    |||||||||| |||| ||||||||||||||||| |||| || || ||||||||| |||||||| || |||||||||||||        |||||||||| |    
T  29058614 atattcataccactcttctaaaattttaaaatgggtcccatcaaacatcacaatgtctcttacatt-atattttatattatttttt--atcaaagaaaac 29058518  T
Q  101 tgaaaaactaccgtagcaatacattatcatggtgccaattaaaaagttgacatggtgctatagggaaatgtgagcacacggcaatttgcaggcgatattg 200  Q
    |||||  |||  || ||||| ||||| || |||||||||||||||| | |||  ||||||| | |||||||||  ||||||||| || ||||||||||||    
T  29058517 tgaaatgctaaggttgcaatgcattaccacggtgccaattaaaaagctaacacagtgctattgagaaatgtgaagacacggcaaatttcaggcgatattg 29058418  T
Q  201 atgct 205  Q
    |||||    
T  29058417 atgct 29058413  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 30717530 - 30717593
Alignment:
Q  16 atctaaaattttaaaatgtgtcctattaatcatcacaatatctcttacgtttatattttatatt 79  Q
    |||||||||||||||||  |||  || || |||||| ||||||||||| |||||||||||||||    
T  30717530 atctaaaattttaaaataggtcacatcaaacatcaccatatctcttacatttatattttatatt 30717593  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 10523915 - 10523993
Alignment:
Q  1 atattcatactactcatctaaaattttaaaatgtgtcctattaatcatcacaatatctcttacgtttatattttatatt 79  Q
    |||||||||| ||  ||||||||||||||| || |||| || || |||||||||||||||||| |||||||||||||||    
T  10523915 atattcataccaccgatctaaaattttaaattgagtcccatcaaacatcacaatatctcttacatttatattttatatt 10523993  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 49787026 - 49787100
Alignment:
Q  1 atattcatactactcatctaaaattttaaaatgtgtcctattaatcatcacaatatctcttacgtttatatttta 75  Q
    |||||||||| |||||||||||| ||||||||| || | ||||| ||||||||||||||| |  |||||||||||    
T  49787026 atattcataccactcatctaaaactttaaaatgggttccattaaacatcacaatatctctaatatttatatttta 49787100  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 19485794 - 19485720
Alignment:
Q  1 atattcatactactcatctaaaattttaaaatgtgtcctattaatcatcacaatatctcttacgtttatattttata 77  Q
    |||||| ||| ||||||||||||||||||| || |||| || || |||||||||||||||||| |||||||||||||    
T  19485794 atattcgtaccactcatctaaaattttaaa-tg-gtcccatcaaacatcacaatatctcttacatttatattttata 19485720  T

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