View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14038_low_40 (Length: 238)

Name: NF14038_low_40
Description: NF14038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14038_low_40
NF14038_low_40
[»] chr1 (2 HSPs)
chr1 (4-221)||(9111166-9111383)
chr1 (33-136)||(9112362-9112461)
[»] chr4 (4 HSPs)
chr4 (33-155)||(4884090-4884210)
chr4 (33-134)||(4905319-4905417)
chr4 (33-134)||(4924585-4924683)
chr4 (45-133)||(4646172-4646257)
[»] chr3 (1 HSPs)
chr3 (1-34)||(16366239-16366272)
[»] chr2 (1 HSPs)
chr2 (1-34)||(21189675-21189708)
[»] scaffold0028 (1 HSPs)
scaffold0028 (1-34)||(110395-110428)


Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 4 - 221
Target Start/End: Complemental strand, 9111383 - 9111166
Alignment:
Q  4 attgttattttgagataattcacatgtcaatgtggatagagtttgagatcatggaatgtggtggatccattgcaaatttctgtacttggagttattattg 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  9111383 attgttattttgagataattcacatgtcaatgtggatagagtttgagatcatggaatgtggcggatccattgcaaatttctgtacttggagttattattg 9111284  T
Q  104 tgttgtttgaatttttagagtggttaatgtgttatcacattatgctgcttaaattagacagtagtaggacatctttgacacatctcttttcatattgtga 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9111283 tgttgtttgaatttttagagtggttaatgtgttatcacattatgctgcttaaattagacagtagtaggacatctttgacacatctcttttcatattgtga 9111184  T
Q  204 tgagtgacatcaacttca 221  Q
    ||||||||||||||||||    
T  9111183 tgagtgacatcaacttca 9111166  T

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Target: chr1; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 33 - 136
Target Start/End: Complemental strand, 9112461 - 9112362
Alignment:
Q  33 atgtggatagagtttgagatcatggaatgtggtggatccattgcaaatttctgtacttggagttattattgtgttgtttgaatttttagagtggttaatg 132  Q
    ||||||||||| |||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||   |||||||||||||||| | ||||||||||    
T  9112461 atgtggatagaatttgtgatcatgga-tgtggtggatccattgcaaattcctgtacttggagttatta---tgttgtttgaattttttgggtggttaatg 9112366  T

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Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 33 - 155
Target Start/End: Original strand, 4884090 - 4884210
Alignment:
Q  33 atgtggatagagtttgagatcatggaatgtggtggatccattgcaaatttctgtacttggagttatt-attgtgt-tgtttgaatttttagagtggttaa 130  Q
    ||||||||||| |||| ||||||||||||||||    ||||||||||| |||||| ||  ||||||| ||||||| |||||  |||||| ||||| ||||    
T  4884090 atgtggatagaatttgggatcatggaatgtggt----ccattgcaaatgtctgtagttacagttattgattgtgtctgtttttattttttgagtgattaa 4884185  T
Q  131 tgtgttatcacattatgctgcttaa 155  Q
    ||| ||||||| |||||||||||||    
T  4884186 tgtattatcacgttatgctgcttaa 4884210  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 33 - 134
Target Start/End: Original strand, 4905319 - 4905417
Alignment:
Q  33 atgtggatagagtttgagatcatggaatgtggtggatccattgcaaatttctgtacttggagttatt-attgtgttgtttgaatttttagagtggttaat 131  Q
    ||||||||||| |||| ||||||||||||||||    ||||||  ||| ||||||||  |||||||| |||||||||||| ||||||| |||||||||||    
T  4905319 atgtggatagaatttgggatcatggaatgtggt----ccattgttaatgtctgtactaagagttattgattgtgttgtttaaattttttgagtggttaat 4905414  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 134
Target Start/End: Original strand, 4924585 - 4924683
Alignment:
Q  33 atgtggatagagtttgagatcatggaatgtggtggatccattgcaaatttctgtacttggagttatt-attgtgttgtttgaatttttagagtggttaat 131  Q
    ||||||||||  |||| ||||||||||||||||    ||||||  ||| ||||||||  |||||||| |||||||||||| ||||||| |||||||||||    
T  4924585 atgtggatagtatttgggatcatggaatgtggt----ccattgttaatgtctgtactaagagttattgattgtgttgtttaaattttttgagtggttaat 4924680  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 133
Target Start/End: Complemental strand, 4646257 - 4646172
Alignment:
Q  45 tttgagatcatggaatgtggtggatccattgcaaatttctgtacttggagttatt-attgtgttgtttgaatttttagagtggttaatgt 133  Q
    |||| ||||||||||||||||    |||||| |||| ||||||||   ||||||| |||||||||||| |||||||  ||||||||||||    
T  4646257 tttgggatcatggaatgtggt----ccattgtaaatgtctgtactaacagttattgattgtgttgtttaaatttttgtagtggttaatgt 4646172  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 16366272 - 16366239
Alignment:
Q  1 ctgattgttattttgagataattcacatgtcaat 34  Q
    ||||||||||||||||||||||||||||||||||    
T  16366272 ctgattgttattttgagataattcacatgtcaat 16366239  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 21189675 - 21189708
Alignment:
Q  1 ctgattgttattttgagataattcacatgtcaat 34  Q
    ||||||||||||||||||||||||||||||||||    
T  21189675 ctgattgttattttgagataattcacatgtcaat 21189708  T

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Target: scaffold0028 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 110395 - 110428
Alignment:
Q  1 ctgattgttattttgagataattcacatgtcaat 34  Q
    |||||| |||||||||||||||||||||||||||    
T  110395 ctgatttttattttgagataattcacatgtcaat 110428  T

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