View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14038_low_5 (Length: 611)
Name: NF14038_low_5
Description: NF14038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14038_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 487; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 13 - 546
Target Start/End: Complemental strand, 29073754 - 29073220
Alignment:
| Q |
13 |
aaaatggccttattgtagagaagatatatgtttgagagtgacaattgaaataaaagacataagatcatagcatgtgaatatgtttctaattaaattaaat |
112 |
Q |
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| T |
29073754 |
aaaatggccttattgtaaagaagatatatgtttgagagtggcaattgaaataaaagacatgagatcatagcatgtgaatatgtttccaattaaattaaat |
29073655 |
T |
|
| Q |
113 |
cagtgtcctaaaatgaaggtcattcatactgtgaacacatgcaatgataacctatagtctatacaaccacatgatatttaaatttcaaccgtaagttagt |
212 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
29073654 |
cagtgacctaaaatgaaggtcattcatactgtgaacacatgcaatgataacctatagtctctacaaccacatgatatttaaatttcaaccataagttagt |
29073555 |
T |
|
| Q |
213 |
caggaacatgttacaaatttgctcataggtctccactatatcccttgtactttaatgtatgcaaagttatatgatccctttgtcagtactcatttcaatc |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29073554 |
caggaacatgttacaaatttgctcataggtctccactatatcccttgtactttaatgtatgcaaagttatatgatccctttgtcagtactcatttcaatc |
29073455 |
T |
|
| Q |
313 |
cttggtgggatccatatttgtggacatgtcccctccagccagacatgatatgattttaggctttggacaat-ccctaatttctacactttttgttttggc |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
29073454 |
cttggtgggatccatatttgtggacatgtcccctccagccagacatgatatgattttaggctttggacaatcccctaatatctacactttttgttttggc |
29073355 |
T |
|
| Q |
412 |
tttctccctgcagcttcggcattatagagaatagacaaaatattattgtattagttgttaaaattttttgaagaaaatttcttatgtttaattaaacaaa |
511 |
Q |
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||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29073354 |
tttctccctccagcttctgcattatagagaatagacaaaatattattgtattagttgttaaaattttttgaagaaaatttcttatgtttaattaaacaaa |
29073255 |
T |
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| Q |
512 |
ctaaaatggacagaccaaaatttattcattaatgc |
546 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
29073254 |
ctaaaatggacagaccaaaatttattcattaatgc |
29073220 |
T |
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