View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14038_low_7 (Length: 586)
Name: NF14038_low_7
Description: NF14038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14038_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 546; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 10 - 567
Target Start/End: Complemental strand, 15182370 - 15181813
Alignment:
| Q |
10 |
ccaagaatattacccccataccaagtgcaatgaccattcctaaagggttgaacatagctacatatattggtcctttcttacggaatgcccatgtgtatac |
109 |
Q |
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|||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15182370 |
ccaaaaatattacccccatgccaagtgcaatgaccattcctaatgggttgaacatagctacatatattggtcctttcttacggaatgcccatgtgtatac |
15182271 |
T |
|
| Q |
110 |
aacactcctcattgataccacacaaattgcctataaatgaaacaaccacaaagtctccacattggttaaattatagttcataaataccgtttttaaagtt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15182270 |
aacactcctcattgataccacacaaattgcctataaatgaaacaaccacaaagtctccacattggttaaattatagttcataaataccgtttttaaagtt |
15182171 |
T |
|
| Q |
210 |
gtgatgcctttataggtctaggttcaaatattgtggattaaagattaacaggttcaaattttacatcactaacatgttcttaattttcttaagtttgtac |
309 |
Q |
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| T |
15182170 |
gtgatgcctttataggtctaggttcaaatattgtggattaaagattaacaggttcaaattttacatcactaacatgttcttaattttcttaagtttgtac |
15182071 |
T |
|
| Q |
310 |
ttaccgaataacacacagctaccaactccctatcaggtctgagaatccaaacttttgaatttccctctgcaatgagagctacaattgcagatagaattac |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15182070 |
ttaccgaataacacacagctaccaactccctatcaggtctgagaatccaaacttttgaatttccctctgcaatgagagctacaattgcagatagaattac |
15181971 |
T |
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| Q |
410 |
caccatgctgcaacaaatgcttgttaccactagctcttcaggataatcccttataatccaagtctgtatatatatgtggaaaaagataaattaaacaaat |
509 |
Q |
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| T |
15181970 |
caccatgctgcaacaaatgcttgttaccactagctcttcaggataatcccttataatccaagtctgtatatatatgtggaaaaagataaattaaacaaat |
15181871 |
T |
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| Q |
510 |
tcccaatttactgcaaggtaagtgcattgtatgccatgcagttgcacgcagtggatac |
567 |
Q |
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| T |
15181870 |
tcccaatttactgcaaggtaagtgcattgtatgccatgcagttgcacgcagtggatac |
15181813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 10 - 150
Target Start/End: Complemental strand, 15192319 - 15192179
Alignment:
| Q |
10 |
ccaagaatattacccccataccaagtgcaatgaccattcctaaagggttgaacatagctacatatattggtcctttcttacggaatgcccatgtgtatac |
109 |
Q |
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|||| |||| || |||||| |||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||| ||| |
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| T |
15192319 |
ccaaaaataatatccccatgccaagtgcaatgaccactcttaaagggttgaacatagctacatatattggtccttttttacgaaatgcccatttgtttac |
15192220 |
T |
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| Q |
110 |
aacactcctcattgataccacacaaattgcctataaatgaa |
150 |
Q |
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| T |
15192219 |
aacactcctcaatgataccacaaatattgcctataaatgaa |
15192179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 308 - 483
Target Start/End: Complemental strand, 15203977 - 15203802
Alignment:
| Q |
308 |
acttaccgaataacacacagctaccaactccctatcaggtctgagaatccaaacttttgaatttccctctgcaatgagagctacaattgcagatagaatt |
407 |
Q |
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|||||| || |||||||||| || |||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||| | ||||| ||| |
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| T |
15203977 |
acttactgagtaacacacagatagcaactctttatcaggtctgagtctccaagcttttgaatttccctctgcaatgagagctacaatggtagatatgatt |
15203878 |
T |
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| Q |
408 |
accaccatgctgcaacaaatgcttgttaccactagctcttcaggataatcccttataatccaagtctgtatatata |
483 |
Q |
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| T |
15203877 |
accacaaaacagcaacaaatggttgttatcactagctcttctggataatccttgacaatccaagtctgcatatata |
15203802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 308 - 484
Target Start/End: Complemental strand, 15210752 - 15210576
Alignment:
| Q |
308 |
acttaccgaataacacacagctaccaactccctatcaggtctgagaatccaaacttttgaatttccctctgcaatgagagctacaattgcagatagaatt |
407 |
Q |
| |
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|||||| || |||||||||| || |||||| ||||||||||||| ||||| | |||||||||||||||||||||||||||||||| | ||||| ||| |
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| T |
15210752 |
acttactgagtaacacacagatagcaactctttatcaggtctgagtctccaagcatttgaatttccctctgcaatgagagctacaatggtagatatgatt |
15210653 |
T |
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| Q |
408 |
accaccatgctgcaacaaatgcttgttaccactagctcttcaggataatcccttataatccaagtctgtatatatat |
484 |
Q |
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| T |
15210652 |
accacaaaacagcaacaaatggtgtttatcactagctcttctggataatccctgacaatccaagtctgtatatatat |
15210576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 10 - 149
Target Start/End: Complemental strand, 15211136 - 15210997
Alignment:
| Q |
10 |
ccaagaatattacccccataccaagtgcaatgaccattcctaaagggttgaacatagctacatatattggtcctttcttacggaatgcccatgtgtatac |
109 |
Q |
| |
|
|||| |||||||||||||| | |||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||| |||||||||| | || |
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| T |
15211136 |
ccaaaaatattacccccatgctaagtgcaatgaccactcttaaaggtttgaacatagctacatatattggtcctttcttacgacatgcccatgtctgtat |
15211037 |
T |
|
| Q |
110 |
aacactcctcattgataccacacaaattgcctataaatga |
149 |
Q |
| |
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|||| || ||| |||| ||||| || |||||||||||||| |
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| T |
15211036 |
aacattcttcaatgattccacaaaagttgcctataaatga |
15210997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 10 - 131
Target Start/End: Complemental strand, 15204850 - 15204728
Alignment:
| Q |
10 |
ccaagaatattacccc-cataccaagtgcaatgaccattcctaaagggttgaacatagctacatatattggtcctttcttacggaatgcccatgtgtata |
108 |
Q |
| |
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|||| ||||||||||| ||| |||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||| |||||||||||| || |
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| T |
15204850 |
ccaaaaatattaccccgcatgccaagtgcaatgaccactcttaaagggttgaaggtagctacatatattggtcctttcttacgacatgcccatgtgttta |
15204751 |
T |
|
| Q |
109 |
caacactcctcattgataccaca |
131 |
Q |
| |
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||||| |||| | |||||||||| |
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| T |
15204750 |
caacattccttaatgataccaca |
15204728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 305 - 475
Target Start/End: Complemental strand, 15192016 - 15191846
Alignment:
| Q |
305 |
tgtacttaccgaataacacacagctaccaactccctatcaggtctgagaatccaaacttttgaatttccctctgcaatgagagctacaattgcagataga |
404 |
Q |
| |
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||||||||| ||| ||||||| |||||||||||| | | |||| | || |||||| | |||||||||||||| |||| ||||||||||| | ||| | |
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| T |
15192016 |
tgtacttactgaaaaacacactgctaccaactccttgttaggtttaagtatccaagcatttgaatttccctcaacaataagagctacaatgcctgattgt |
15191917 |
T |
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| Q |
405 |
attaccaccatgctgcaacaaatgcttgttaccactagctcttcaggataatcccttataatccaagtctg |
475 |
Q |
| |
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|||||||||| ||| |||||| |||||| | ||| |||||||||||| || | ||| |||||||||| |
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| T |
15191916 |
attaccaccaagctaatacaaatagatgttactagtagttcttcaggataagccttgatagtccaagtctg |
15191846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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