View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14039_high_2 (Length: 611)
Name: NF14039_high_2
Description: NF14039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14039_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 511; Significance: 0; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 20 - 607
Target Start/End: Original strand, 11033647 - 11034229
Alignment:
| Q |
20 |
ggtagcaacttcattgacaaaatctcgatcgttggacttggctctatccaataatttgactgctaccagacgaccacttcgaagttgtcctttaaaaaca |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11033647 |
ggtagcaacttcattgacaaaatctcgatcgttggacttggctctatccaataatttgactgctaccagacgaccacttcgaagttgtcctttaaaaacg |
11033746 |
T |
|
| Q |
120 |
gatccataacctccattgcctagttttgtcttgaattgttcagttatcctttttatgtctttgtaagaatacctgataggcatgatgctattgtcactac |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
11033747 |
gatccataacctccattgcctagttttgtcttgaattgttcagttatcctttttatgtctttgtaagaatacctaataggcatgatgctattgtcactac |
11033846 |
T |
|
| Q |
220 |
gtagaaaatcttcgatgccatcatacattgatagatgtttccgtcgccatttgtagattactagtgcaatgatcaatggcgctccaagaacaaatttaac |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11033847 |
gtagaaaatcttcgatgccatcatacattgatagatgtttccgtcgccatttgtagattactagtgcaatgatcaatggcgctccaagaacaaatttaac |
11033946 |
T |
|
| Q |
320 |
accgctaagaaaaacaatcaatgcaactgcaaagtgaaaactgaaaaatatgatgcgatacatttcaatcaatgttatagtccacgtttcgaaaagaaca |
419 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11033947 |
accgctaagaaaaacaaccaatgcaactgcaaagtgaaaactgaaaaatatgatgctatacatttcaatcaatgttatagtccacgtttcgaaaagaaca |
11034046 |
T |
|
| Q |
420 |
gaatatgggtaggcaaccaaataactcatgcgaaaaatattgcccaatattacttactattgacaagttttttagaagaaaagacatcatactaacaaca |
519 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
11034047 |
gaatatgggtaggcaaccaaataactcatgcgaaaaatattgcccaata----ttactatttacaagttttttagaagaaaagacatcatactaacaaca |
11034142 |
T |
|
| Q |
520 |
gaacaagnnnnnnnnnatagtttttgtactgaaaatttgttttctaaactttattttaagtcttatgtcttgcttacctatgctactc |
607 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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|
| T |
11034143 |
gaacaag-ttttttttatagtttttgtactgaaaatttgttttctaaactttattttaagtcttatgtcttgcttacctgtgcgactc |
11034229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 20 - 341
Target Start/End: Original strand, 11008194 - 11008515
Alignment:
| Q |
20 |
ggtagcaacttcattgacaaaatctcgatcgttggacttggctctatccaataatttgactgctaccagacgaccacttcgaagttgtcctttaaaaaca |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
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|
| T |
11008194 |
ggtagcaacttcattgacaaaatctcgatcgttggacttggcactgtccaataatttgactgctacaagacgaccacttcgaagttgtcctttgaaaaca |
11008293 |
T |
|
| Q |
120 |
gatccataacctccattgcctagttttgtcttgaattgttcagttatcctttttatgtctttgtaagaatacctgataggcatgatgctattgtcactac |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| | | | |||||| ||||||| ||||||||||| ||||| ||||| ||||||||||| ||||||| |
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| T |
11008294 |
gatccataacctccattgcctagttttgtcatgaaatttccggttatcttttttatctctttgtaagagtaccttatagggatgatgctattatcactac |
11008393 |
T |
|
| Q |
220 |
gtagaaaatcttcgatgccatcatacattgatagatgtttccgtcgccatttgtagattactagtgcaatgatcaatggcgctccaagaacaaatttaac |
319 |
Q |
| |
|
|||||||||||||| |||||||||||| ||| |||||||| ||||||||| | ||||| || | ||||||| |||||| |||||||||||||||||| |
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| T |
11008394 |
ttagaaaatcttcgacgccatcatacatagattgatgtttctttcgccattttttgattaataatacaatgataaatggcaatccaagaacaaatttaac |
11008493 |
T |
|
| Q |
320 |
accgctaagaaaaacaatcaat |
341 |
Q |
| |
|
||||||||| ||| ||| |||| |
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|
| T |
11008494 |
accgctaagcaaaccaaccaat |
11008515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 20 - 318
Target Start/End: Original strand, 11011356 - 11011654
Alignment:
| Q |
20 |
ggtagcaacttcattgacaaaatctcgatcgttggacttggctctatccaataatttgactgctaccagacgaccacttcgaagttgtcctttaaaaaca |
119 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
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|
| T |
11011356 |
ggtagcaacttcattgacaaaatcttgatcactggacttggctttgtccaataatttgactgctacaagacgaccacttcgaagttgtcctttgaaaaca |
11011455 |
T |
|
| Q |
120 |
gatccataacctccattgcctagttttgtcttgaattgttcagttatcctttttatgtctttgtaagaatacctgataggcatgatgctattgtcactac |
219 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| |||||| ||||||| ||| ||||||| ||||| ||||| ||||||||||||||||||| |
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| T |
11011456 |
gatccataccctccattgcctagttttgtcttgaattgttcggttatcttttttatatctctgtaagagtaccttatagggatgatgctattgtcactac |
11011555 |
T |
|
| Q |
220 |
gtagaaaatcttcgatgccatcatacattgatagatgtttccgtcgccatttgtagattactagtgcaatgatcaatggcgctccaagaacaaatttaa |
318 |
Q |
| |
|
||||||||||||| ||| |||||||| |||||||| |||||||||||||||||||||| || | |||| || || | ||||||||||||||||||| |
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|
| T |
11011556 |
taagaaaatcttcgacgccgtcatacatagatagatgcttccgtcgccatttgtagattaataatacaatcatacatagtgctccaagaacaaatttaa |
11011654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 25 - 323
Target Start/End: Original strand, 10915060 - 10915358
Alignment:
| Q |
25 |
caacttcattgacaaaatctcgatcgttggacttggctctatccaataatttgactgctaccagacgaccacttcgaagttgtcctttaaaaacagatcc |
124 |
Q |
| |
|
|||||||||||| ||||||| || |||||||||||||| | ||||||||||| |||||||| |||||||||||| ||||||||||||| ||||||||||| |
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|
| T |
10915060 |
caacttcattgataaaatcttgaccgttggacttggctttgtccaataatttaactgctacaagacgaccactttgaagttgtcctttgaaaacagatcc |
10915159 |
T |
|
| Q |
125 |
ataacctccattgcctagttttgtcttgaattgttcagttatcctttttatgtctttgtaagaatacctgataggcatgatgctattgtcactacgtaga |
224 |
Q |
| |
|
||||||||||||||||| |||||| ||||| || | |||||| ||||||||||||||||||| ||||| |||||||||||| |||||||||| |||||| |
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|
| T |
10915160 |
ataacctccattgcctaattttgttttgaactggtgtgttatcttttttatgtctttgtaagagtaccttataggcatgatgttattgtcacttcgtaga |
10915259 |
T |
|
| Q |
225 |
aaatcttcgatgccatcatacattgatagatgtttccgtcgccatttgtagattactagtgcaatgatcaatggcgctccaagaacaaatttaacaccg |
323 |
Q |
| |
|
|| ||||||| ||| |||||||| || | ||||||||||| |||||||||||||| || ||||||||| |||||||||||||||||||||||| |||| |
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|
| T |
10915260 |
aagtcttcgacgccgtcatacatagagaaatgtttccgtctccatttgtagattaataatgcaatgatacatggcgctccaagaacaaatttaaaaccg |
10915358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 20 - 279
Target Start/End: Complemental strand, 11004666 - 11004407
Alignment:
| Q |
20 |
ggtagcaacttcattgacaaaatctcgatcgttggacttggctctatccaataatttgactgctaccagacgaccacttcgaagttgtcctttaaaaaca |
119 |
Q |
| |
|
||||| ||||||||||||||||||| || |||||| ||||||| | |||||||||||||| ||||| |||||| |||||||||||| ||||||||||||| |
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|
| T |
11004666 |
ggtagtaacttcattgacaaaatcttgaccgttggtcttggctttgtccaataatttgaccgctacaagacgatcacttcgaagttttcctttaaaaaca |
11004567 |
T |
|
| Q |
120 |
gatccataacctccattgcctagttttgtcttgaattgttcagttatcctttttatgtctttgtaagaatacctgataggcatgatgctattgtcactac |
219 |
Q |
| |
|
| |||||||||||| |||||||||||| ||||||||||||| |||||| ||||||||||||||||||| ||||| ||||||||||||||||| ||||| | |
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|
| T |
11004566 |
gttccataacctccgttgcctagttttatcttgaattgttctgttatcttttttatgtctttgtaagagtaccttataggcatgatgctattatcactgc |
11004467 |
T |
|
| Q |
220 |
gtagaaaatcttcgatgccatcatacattgatagatgtttccgtcgccatttgtagatta |
279 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||| |
|
|
| T |
11004466 |
gtagaaaatcttcgatgccatcatacacagataaatgtttttgtcgccatttgtagatta |
11004407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 25 - 320
Target Start/End: Original strand, 10983985 - 10984280
Alignment:
| Q |
25 |
caacttcattgacaaaatctcgatcgttggacttggctctatccaataatttgactgctaccagacgaccacttcgaagttgtcctttaaaaacagatcc |
124 |
Q |
| |
|
|||||||||||| |||||| || | |||||||||||| | |||||||||||||||||||| |||| ||| ||||| ||||||||||||||||||| ||| |
|
|
| T |
10983985 |
caacttcattgatgaaatcttgaccattggacttggctttgtccaataatttgactgctacaagacaaccgcttcgtagttgtcctttaaaaacagttcc |
10984084 |
T |
|
| Q |
125 |
ataacctccattgcctagttttgtcttgaattgttcagttatcctttttatgtctttgtaagaatacctgataggcatgatgctattgtcactacgtaga |
224 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||| |||||| ||||||||||||||||||| ||||| || |||||||||||||||||||| | ||| |
|
|
| T |
10984085 |
ataacctccattgcctaattttgttttgaattgttctgttatcttttttatgtctttgtaagagtaccttatcggcatgatgctattgtcactcctcaga |
10984184 |
T |
|
| Q |
225 |
aaatcttcgatgccatcatacattgatagatgtttccgtcgccatttgtagattactagtgcaatgatcaatggcgctccaagaacaaatttaaca |
320 |
Q |
| |
|
|||||||| ||||||||||||| |||| ||||| |||||| ||||||||||||| || | ||||||| | ||||||||||| |||||||||||| |
|
|
| T |
10984185 |
aaatcttcaatgccatcatacacagataaatgttcccgtcgacatttgtagattaataatacaatgatgcaaggcgctccaaggacaaatttaaca |
10984280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 20 - 279
Target Start/End: Original strand, 10903892 - 10904151
Alignment:
| Q |
20 |
ggtagcaacttcattgacaaaatctcgatcgttggacttggctctatccaataatttgactgctaccagacgaccacttcgaagttgtcctttaaaaaca |
119 |
Q |
| |
|
||||||||||||||||| ||||||| || | ||||| |||||| | ||||||||||| || ||| | |||||||||||||||||||||||||| | ||| |
|
|
| T |
10903892 |
ggtagcaacttcattgataaaatcttgaccattggatttggctttgtccaataatttcaccgctgcaagacgaccacttcgaagttgtcctttgtagaca |
10903991 |
T |
|
| Q |
120 |
gatccataacctccattgcctagttttgtcttgaattgttcagttatcctttttatgtctttgtaagaatacctgataggcatgatgctattgtcactac |
219 |
Q |
| |
|
|| ||||| |||||||| |||| ||||||||||||||| |||||||| |||| ||||||||||| || || || |||||||||||| ||||| ||| |
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|
| T |
10903992 |
gagccatagcctccattccctaattttgtcttgaattgctcagttatttttttgatgtctttgtatgagtatcttataggcatgatgtcattgttactgt |
10904091 |
T |
|
| Q |
220 |
gtagaaaatcttcgatgccatcatacattgatagatgtttccgtcgccatttgtagatta |
279 |
Q |
| |
|
| ||||||||||||||||| || ||||| |||| ||| || ||||||||||||| |||| |
|
|
| T |
10904092 |
gcagaaaatcttcgatgccctcgtacatcgataagtgtctctgtcgccatttgtaaatta |
10904151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 53 - 148
Target Start/End: Complemental strand, 11028225 - 11028130
Alignment:
| Q |
53 |
ggacttggctctatccaataatttgactgctaccagacgaccacttcgaagttgtcctttaaaaacagatccataacctccattgcctagttttgt |
148 |
Q |
| |
|
|||||||| | | ||||||||||| |||||||| || | ||| |||||||||||||||| |||||||| |||||||||||| | ||||||||||| |
|
|
| T |
11028225 |
ggacttggttttgtccaataattttactgctacaagtcagccatttcgaagttgtcctttgaaaacagacccataacctccacttcctagttttgt |
11028130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 171 - 259
Target Start/End: Complemental strand, 11028122 - 11028034
Alignment:
| Q |
171 |
tttatgtctttgtaagaa-tacctgataggcatgatgctattgtcactacgtagaaaatcttcgatgccatcatacattgatagatgttt |
259 |
Q |
| |
|
|||||||||||| ||||| ||||| || ||||||||||||||||||| ||||||||| ||||||||| | |||||||||| |||||| |
|
|
| T |
11028122 |
tttatgtctttg-aagaagtaccttattggcatgatgctattgtcacggcgtagaaaactttcgatgccgttgtacattgataaatgttt |
11028034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 349 - 430
Target Start/End: Original strand, 11008601 - 11008683
Alignment:
| Q |
349 |
caaagtgaaaactgaaaaatatgatgcgatacatttcaatcaatgttatagtccac-gtttcgaaaagaacagaatatgggta |
430 |
Q |
| |
|
|||||||||||| ||||||| ||||| ||| ||||||||||| |||||| || || ||| |||||||||||||||||||| |
|
|
| T |
11008601 |
caaagtgaaaaccgaaaaatttgatgtgatgtatttcaatcaaagttatactcaacttttttaaaaagaacagaatatgggta |
11008683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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