View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14039_high_21 (Length: 245)
Name: NF14039_high_21
Description: NF14039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14039_high_21 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 580928 - 581153
Alignment:
| Q |
1 |
tttttaacaatgaatgtcatgatcttgaagtaatttatttttataataatgtagcacaagtaggataaatatttatgagtttaatccttttgttataata |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
580928 |
tttttaacaatgaatgtcatgatcttgaagtaatttatttttataataatgtatcacaagtaggataaatatttatgagtttaatccttttgttgtaata |
581027 |
T |
|
| Q |
101 |
taaatcagtttcgttgcgtcatccattccaggttctggatctgaaaaagatgctaccaaaaaagctatgtgtatttccaatgttgacccatttggaggtt |
200 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
581028 |
taaatcagtttcgttgtgtcatccattccaggttctggatctgaaaaagatgctaccaaaaaagctatgtgtatttccaatgttgacccatttggaggtt |
581127 |
T |
|
| Q |
201 |
ggatttgttagtgttgatattctctt |
226 |
Q |
| |
|
|| || |||||||||||||||||||| |
|
|
| T |
581128 |
ggcttcgttagtgttgatattctctt |
581153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 149 - 226
Target Start/End: Original strand, 1207516 - 1207593
Alignment:
| Q |
149 |
gatgctaccaaaaaagctatgtgtatttccaatgttgacccatttggaggttggatttgttagtgttgatattctctt |
226 |
Q |
| |
|
||||| ||||||| |||| || |||||||||||||||||| ||||||||||||| || |||||||| || |||||||| |
|
|
| T |
1207516 |
gatgcaaccaaaagagctgtgcgtatttccaatgttgaccgatttggaggttggcttagttagtgtcgaaattctctt |
1207593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 223
Target Start/End: Original strand, 1214741 - 1214798
Alignment:
| Q |
166 |
tatgtgtatttccaatgttgacccatttggaggttggatttgttagtgttgatattct |
223 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||| || |||||||||||||||| |
|
|
| T |
1214741 |
tatgtgtatttccaatgttggcccatttggatgttggcttacttagtgttgatattct |
1214798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 226
Target Start/End: Original strand, 1201351 - 1201412
Alignment:
| Q |
165 |
ctatgtgtatttccaatgttgacccatttggaggttggatttgttagtgttgatattctctt |
226 |
Q |
| |
|
|||||||||||| ||| |||||| |||||||||||||| || |||||||||||| |||||| |
|
|
| T |
1201351 |
ctatgtgtattttcaacgttgacacatttggaggttggcttgattagtgttgataatctctt |
1201412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 162 - 223
Target Start/End: Complemental strand, 8188851 - 8188790
Alignment:
| Q |
162 |
aagctatgtgtatttccaatgttgacccatttggaggttggatttgttagtgttgatattct |
223 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| || ||||||||| ||||||| |
|
|
| T |
8188851 |
aagctatgtgtatttccaatgttgaccgatttggaggttggtttagttagtgttaatattct |
8188790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 137
Target Start/End: Complemental strand, 8188904 - 8188864
Alignment:
| Q |
97 |
aatataaatcagtttcgttgcgtcatccattccaggttctg |
137 |
Q |
| |
|
|||||||||||||||||||| | ||| |||||||||||||| |
|
|
| T |
8188904 |
aatataaatcagtttcgttgtgccattcattccaggttctg |
8188864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University