View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14039_high_8 (Length: 487)
Name: NF14039_high_8
Description: NF14039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14039_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 20 - 421
Target Start/End: Original strand, 2094776 - 2095173
Alignment:
| Q |
20 |
ggttatgggtgagagtccttcaagacaaatatggggttacttggggagatatttggagtttaaataaagggttagtggatcattccttaaattggttttc |
119 |
Q |
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| T |
2094776 |
ggttatgggtgagagtccttcaagacaaatatggggatacttggg-agatatttggagtttaaataaagggttagtggatcattccttaaattggttttc |
2094874 |
T |
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| Q |
120 |
attagtttaaggatgaaggtgggattggtagggacacnnnnnnnnnnngaaaggagccttggttaaacgggttaacgttgagagaaagatttaacatact |
219 |
Q |
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| T |
2094875 |
attagtttaaggatgaaggtggggatggtagggacactttttttt---gaaaggagccttggttaaacgggttaacgttgagagaaagatttaacatact |
2094971 |
T |
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| Q |
220 |
ttattgaatagcatacaggaaaaatacaataacgttgatgatgcaaaaatgaattttagaaagggaagctccttaagactataatatagtgaaattcttc |
319 |
Q |
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| T |
2094972 |
ttattgaatagcataccggaaaaatacaataacgttgatgatgcaaaaatcaattttagaaagggaagctccttaagactataatatagtgaaattcttc |
2095071 |
T |
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| Q |
320 |
tcatcattccttataattatcatatgtgattatttatatgctaaagacacaataattctaacgcatatacgtatgattgttcttgtagcatcatatatat |
419 |
Q |
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| T |
2095072 |
tcatcattccttataattatcatatgtgattatttatatgctaaagacacaataattctaatgcatatacgtatgattgttcttgtagcatcatatatat |
2095171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 412 - 464
Target Start/End: Original strand, 2095228 - 2095280
Alignment:
| Q |
412 |
atatatatattcatatacatcaatcaaacacctaaaaatgcctctagtgtaat |
464 |
Q |
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| T |
2095228 |
atatatatatacatatacatcaatcaaacacctaaaaatgcctctagtgtaat |
2095280 |
T |
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