View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14039_high_9 (Length: 460)
Name: NF14039_high_9
Description: NF14039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14039_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 12 - 437
Target Start/End: Complemental strand, 10309327 - 10308901
Alignment:
| Q |
12 |
agcagcacagacagacaattcaggtaacttcatcagttatggttttgcattaatatatacgacataaaaaatgtcttaatgttaaggaaacttcttttgc |
111 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10309327 |
agcaccacagacagacaattcaggtaacttcatcagttatggttttgcattaatatatacgacataaaaaatgtcttaatgttaaggaaacttcttttgc |
10309228 |
T |
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| Q |
112 |
tctgatattacaattgacaagtaataaaattctggacttgttattcatcttaannnnnnnnncctt-cagtatatactgccacacgaacatgaaaagctc |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||| |
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| T |
10309227 |
tctgatattacaattgacaagtaataaaattctggactttttattcatcttatttttttttttttttcagtatatactgccacacgaacatgaaaagctc |
10309128 |
T |
|
| Q |
211 |
tcgcaagttgaactgttggtagttgatgaagctgccgctattccactgcctgtggtgaagtctttgcttggcccatatttggtcttcctgtcttctactg |
310 |
Q |
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| T |
10309127 |
tcacaagttgaactgttggtagttgatgaagctgccgctattccactgcctgtggtgaagtctttgcttggcccatatttggtcttcctgtcttctactg |
10309028 |
T |
|
| Q |
311 |
ttaatgggtatgaccattgtttgtttttgtgaaacattccatatatctccccatttaaaagagttaacatcgacattactgattgacggtaagaactctg |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
10309027 |
ttaatgggtatgaccattgtttgtttttgtgaaacattccatatatctccccatttaaaagagttaacatcgacattactgattgatggtaagaactctg |
10308928 |
T |
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| Q |
411 |
nnnnnnnnacactggacagttatgaag |
437 |
Q |
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| T |
10308927 |
ttttttttacactggacagttatgaag |
10308901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 176 - 357
Target Start/End: Complemental strand, 38432172 - 38431990
Alignment:
| Q |
176 |
ttcagtatatactgccacacgaacatgaaaagctctcgcaagttgaactgttggtagttgatgaagctgccgctattccactgcctgtggtgaagtcttt |
275 |
Q |
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| T |
38432172 |
ttcagtatatactgccacacgaacatgaaaagctttcgcaagttgaattattggttgttgatgaagcagctgctattccactgccgacagtgaagtcttt |
38432073 |
T |
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| Q |
276 |
gcttggcccatatttggtcttcctgtcttctactgttaatgggtatgaccattgtttg-tttttgtgaaacattccatatatc |
357 |
Q |
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| T |
38432072 |
gcttggcccatatctggtcttcctgtcttccactgttaatgggtatgactggtgtttgcttttggtgaaactttccatatatc |
38431990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 203 - 252
Target Start/End: Original strand, 11191789 - 11191838
Alignment:
| Q |
203 |
aaaagctctcgcaagttgaactgttggtagttgatgaagctgccgctatt |
252 |
Q |
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| T |
11191789 |
aaaagctctcgcaagttgaattattggtcgttgatgaagctgctgctatt |
11191838 |
T |
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