View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14039_low_11 (Length: 421)
Name: NF14039_low_11
Description: NF14039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14039_low_11 |
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| [»] chr7 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 18 - 421
Target Start/End: Complemental strand, 43031182 - 43030777
Alignment:
| Q |
18 |
aatttttacactcctagttcgcttccttttacacacagagttcaatatactattgattgaggatgttgagggtattggtactgcaag----gtgattgat |
113 |
Q |
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| T |
43031182 |
aatttttacactgctagttcgcttccttttacacacacagttcaatatactattgattgaggatgttgagggtattggtactgcaagcaaggtgattgat |
43031083 |
T |
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| Q |
114 |
tgttcaaaaaactaccatgtaaattttctttaaacttttggattttgtaacaaatatgagttgtaaatttgtgtgttttaggggaaagagaatttgaagt |
213 |
Q |
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| T |
43031082 |
tgttcaaaaaaataccatgtaaattttctttaaacttttggattttgtaacaaatatgagttgtaaatttgtgtgttttaggggaaagagaatttgaagt |
43030983 |
T |
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| Q |
214 |
tgcaatcgagnnnnnnnngcatggatcagttacatgagcttctcaatggnnnnnnngtggaaactccccaagaagctatcaatgccattgacattgtatt |
313 |
Q |
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| T |
43030982 |
tgcaatcgagttttttttgcatggatcagttaca--agcttctcagtggaaaaaaagtggaaactccccaagaagctatcaatgccattgacattttatt |
43030885 |
T |
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| Q |
314 |
gaaagagcttgcatctcataggtgaatttctgcttggtctttcaaattttaacatatcatattattgtttcttacaccttaatttgcatctttatctatg |
413 |
Q |
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| T |
43030884 |
gaaagagcttgcatctcataggtgaatttctgcctggtctttcaaattttatcatatcatattattgtttcttacaccttaatttgcatctttatctatg |
43030785 |
T |
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| Q |
414 |
catcattt |
421 |
Q |
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| T |
43030784 |
catcattt |
43030777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 180; Significance: 5e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 34 - 421
Target Start/End: Original strand, 46527234 - 46527631
Alignment:
| Q |
34 |
gttcgcttccttttacacaca--gagttcaatatactattgattgaggatgttgagggtattggtactgcaaggtgattgattg-ttcaaaaaactacca |
130 |
Q |
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| T |
46527234 |
gttcgcttccttttacacacaaagagttcaatatactattgattgaggatgatgagggttttggtactacaaggtgattgatttattcaagaaaaaacca |
46527333 |
T |
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| Q |
131 |
tgtaaattttctttaaacttttggattttgtaacaaatatga-gttgtaaatttgtgtgttttaggggaaagagaatttgaagttgcaatcgagnnnnnn |
229 |
Q |
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| T |
46527334 |
tgtaaattttctttaaatttttggattttgtaacaaatatgaagttgtaaatttgtgtgttca--gggaaagaaaatttgaagttgcaatcaagttttta |
46527431 |
T |
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| Q |
230 |
nngcatgg--------atcagttacatgagcttctcaatggnnnnnnngtggaaactccccaagaagctatcaatgccattgacattgtattgaaagagc |
321 |
Q |
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|||| ||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
46527432 |
gctcatgttagtatgcatcagttacatgagcttctcagtggaaaaaaagtggaaactccacaagaagctatcaatgccattgacattgtattgaaggagc |
46527531 |
T |
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| Q |
322 |
ttgcatctcataggtgaatttctgcttggtctttcaaattttaacatatcatattattgtttcttacaccttaatttgcatctttatctatgcatcattt |
421 |
Q |
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| T |
46527532 |
ttgcatctcataggtgaatttgagctttgtctttcaagttttaacatatcatgttattgtttctgacaccttaatttgtatatttagctatgtatcattt |
46527631 |
T |
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