View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14039_low_12 (Length: 408)
Name: NF14039_low_12
Description: NF14039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14039_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 18 - 403
Target Start/End: Original strand, 52033745 - 52034130
Alignment:
| Q |
18 |
aatcaaggtcacattaatatgagtatcttcttttctatttcctatggtattggctttgctgccattgtctctacactcactcacgttgccatatttaatg |
117 |
Q |
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| T |
52033745 |
aatcaaggtcacattaatatgagtatcttcttttctatttcctatggtattggctttgctgccattgtctctacactcactcacgttgccatatttaatg |
52033844 |
T |
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| Q |
118 |
gaaagtaagttatggttaagttacattgcatatatagttctcaaattgtggaattaaattactattgctgattaaattaactaactgcagagatatatat |
217 |
Q |
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| T |
52033845 |
gaaagtaagttatggttaagttacattgcatatatagttctcaaattgtggaattaaattactattgctgattaaattaactaactgcagagatatatat |
52033944 |
T |
|
| Q |
218 |
catcaacttcaatcttcccgaactggaaaggaagacattcacacaagattgatgaagaagtataaagacatacctaattggtggtttcatgttacgcttg |
317 |
Q |
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| T |
52033945 |
catcaacttcaatcttcccgaactggaaaggaagacattcacacaagattgatgaagaagtataaagacatacctaattggtggtttcatgttacgcttg |
52034044 |
T |
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| Q |
318 |
tggtttcatttttacttgcacttgcattgtgtattttcatgaaagaagagatacaaatgccatggtgggctctcacctttgcttct |
403 |
Q |
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| T |
52034045 |
tggtttcatttttacttgcacttgcattgtgtattttcaagaaagaagagatacaaatgccatggtgggctctcatctttgcttct |
52034130 |
T |
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