View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14039_low_13 (Length: 399)
Name: NF14039_low_13
Description: NF14039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14039_low_13 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 49 - 399
Target Start/End: Complemental strand, 28294941 - 28294603
Alignment:
| Q |
49 |
aaaataatggttatacaacacaagtcctgatttttataaaatttaacttggcattctctattagcattcacaaaatactgatatgaatctaatctttttg |
148 |
Q |
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| T |
28294941 |
aaaaaaatggttatacagcacaagtcctgatttttataaaatttaacttggcattctctattagcattcacaaaatactgatatgaatctagtctttttg |
28294842 |
T |
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| Q |
149 |
ttacttttatagagaaatgtacttcatggatccagctaggtttctcttattgtgtatgtaacacttgtgacgagttgagtatccaatattacattttgaa |
248 |
Q |
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| T |
28294841 |
ttactt------------gtacttcatggatccagctaggtttctctcattgtgaatgtaacacttgtgacgagttgagtatccaatattacattttgaa |
28294754 |
T |
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| Q |
249 |
catacttgtgacgagttcaatttctcttgcctagttagctttgaatgagagtacatatatatcttgtcatgacaaagataggataattttcttttactag |
348 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
28294753 |
catacttgtaacgagttcaatttctcttgcctagttagctttgaatgtcagtacatatatattttgtcatgacaaagataggataattttcttttactag |
28294654 |
T |
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| Q |
349 |
gatttagtcttacaaacctcacatactaacgttcatgtatgctatattcat |
399 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
28294653 |
gatttagtcttacaaacctcacatactaatgttcatgtatgctatattcat |
28294603 |
T |
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