View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14039_low_17 (Length: 324)
Name: NF14039_low_17
Description: NF14039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14039_low_17 |
 | |
|
| [»] scaffold0291 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 18 - 317
Target Start/End: Complemental strand, 7988615 - 7988315
Alignment:
| Q |
18 |
ccaacaaatctcagaagacacttctacactaaaaaccacctttataaccttttactgtttacggtgggatttctccatttctatattggcaatagagaac |
117 |
Q |
| |
|
|||||| |||| ||| |||||||||||||||||| |||||||| || |||||||||||| ||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
7988615 |
ccaacatatcttagacgacacttctacactaaaagtcaccttta--actttttactgtttaaggtagaatttctccatttctatattggcaatagagaac |
7988518 |
T |
|
| Q |
118 |
ttcttctttcctcgaagctccatttatttattttttagatt---atataagtatcttcaatgaaagatgaaagttaatcctattcgagagaacaactaaa |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7988517 |
ttcttctttcctcgaagctccatttatttatttttaagatttttatataagtatcctcaatgaaagatgaaagttaatcctattcgagagaacaactaaa |
7988418 |
T |
|
| Q |
215 |
attaaatgtatatccattaaaattataatattcacacatattatgtatggagaagtggagaattcgggattcgaaccgtgactctttgcacaaattatct |
314 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||| ||||| | | ||||||| ||||||||||||| |||| | || |||| |||||||||||| |
|
|
| T |
7988417 |
ataaaatgtatatccattaaaattataatattcacacacattatctgtagagaagtaaggaattcgggattcaaaccctaaccctttacacaaattatct |
7988318 |
T |
|
| Q |
315 |
ctg |
317 |
Q |
| |
|
||| |
|
|
| T |
7988317 |
ctg |
7988315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 244 - 291
Target Start/End: Complemental strand, 30327754 - 30327707
Alignment:
| Q |
244 |
attcacacatattatgtatggagaagtggagaattcgggattcgaacc |
291 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||| |||||||| |
|
|
| T |
30327754 |
attcacacatattatgtgtggagaagtggcgaattcggggttcgaacc |
30327707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 288
Target Start/End: Complemental strand, 29045864 - 29045820
Alignment:
| Q |
244 |
attcacacatattatgtatggagaagtggagaattcgggattcga |
288 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||| |||||||||| |
|
|
| T |
29045864 |
attcacacacattatgtatggagaagtggggaatccgggattcga |
29045820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 21023695 - 21023740
Alignment:
| Q |
244 |
attcacacatattatgtatggagaagtggagaattcgggattcgaa |
289 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||| |||| |||||| |
|
|
| T |
21023695 |
attcacacacattatgtgtggagaagtggagaatccggggttcgaa |
21023740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 244 - 291
Target Start/End: Complemental strand, 28300186 - 28300139
Alignment:
| Q |
244 |
attcacacatattatgtatggagaagtggagaattcgggattcgaacc |
291 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||| |||| |||||||| |
|
|
| T |
28300186 |
attcacacacattatgtatggagaagtggggaatccggggttcgaacc |
28300139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 291
Target Start/End: Complemental strand, 13350856 - 13350807
Alignment:
| Q |
242 |
atattcacacatattatgtatggagaagtggagaattcgggattcgaacc |
291 |
Q |
| |
|
||||||||| ||||||||| |||||||||||| ||||||| |||||||| |
|
|
| T |
13350856 |
atattcacaaatattatgtgtggagaagtggaaaattcggagttcgaacc |
13350807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0291 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0291
Description:
Target: scaffold0291; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 280
Target Start/End: Original strand, 7234 - 7266
Alignment:
| Q |
248 |
acacatattatgtatggagaagtggagaattcg |
280 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |
|
|
| T |
7234 |
acacatattatgtatagagaagtggagaattcg |
7266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University