View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14039_low_4 (Length: 578)
Name: NF14039_low_4
Description: NF14039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14039_low_4 |
 | |
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| [»] scaffold0272 (3 HSPs) |
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| [»] scaffold0097 (1 HSPs) |
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Alignment Details
Target: scaffold0272 (Bit Score: 479; Significance: 0; HSPs: 3)
Name: scaffold0272
Description:
Target: scaffold0272; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 17 - 564
Target Start/End: Complemental strand, 9836 - 9289
Alignment:
| Q |
17 |
agggagaatttcttcaacaaaataaaataacaaagggagaatagtgaggcagtgttgtgtgtattctaaaatcaaagtgacgtcaagattcgaacaagac |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9836 |
agggagaatttcttcaacaaaataaaataacaaagggagaatagtgaggcagtgttgtgtgtattctaaaatcaaagtgacgtcaagattcgaacaagac |
9737 |
T |
|
| Q |
117 |
ttcccggtcaaccaagtgaactattcattccctctttaattcattcatcaataactatagctccaacaatttaatcgtaaataaaataataagaaatagg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9736 |
ttcccggtcaaccaagtgaactattcattccctctttaattcattcatcaataactatagctccaacaatttaatcgtaaataaaataataagaaatagg |
9637 |
T |
|
| Q |
217 |
gggacaaaagggtttgacttgagcccataagaacaagttttgaatnnnnnnnttgcttttttgacatagaaaattttataatgacacatgaaaatgacgt |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9636 |
gggacaaaagggtttgacttgagcccataagaacaagttttgaataaaaaaattgcttttttgacatagaaaattttataatgacacatgaaaatgacgt |
9537 |
T |
|
| Q |
317 |
ttttatctccagcggtaattaacaactgttggatttatctggcggttgttaactaccgttctaaatatacaatgcnnnnnnnnnnnnnnnnttaattgct |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
9536 |
ttttatctccagcggtaattaacaactgttggatttatctggcggttgttaactaccgttctaaatatacaatgcaaaaaaaataaaaaaattaattgct |
9437 |
T |
|
| Q |
417 |
ccaacgatagttaactaccgtggagcatgtataattaattttttgggttggtacttgataataatcaatgtcaagagctttattgaatctcctttacatt |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9436 |
ccaacgatagttaactaccgtggagcatgtataattaattttttgggttggtacttgataataatcaatgtcaagagctttattgaatctcctttacatt |
9337 |
T |
|
| Q |
517 |
tttgggttgggttggtacttggagcatgtatatttaattgttccaagt |
564 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9336 |
tttgggttgggttggtacttggagcatgtatatttaattgttccaagt |
9289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0272; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 269 - 376
Target Start/End: Original strand, 8895 - 9001
Alignment:
| Q |
269 |
ttgcttttttgacatagaaaattttataatgacacatgaaaatgacgtttttatctccagcggtaattaacaactgttggatttatctggcggttgttaa |
368 |
Q |
| |
|
|||||||||| ||||| |||| || ||||||||| || |||||||||||||| ||||| ||||| ||||| || | |||||||||| |||||||||||| |
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|
| T |
8895 |
ttgcttttttaacatacaaaacttcataatgacatatagaaatgacgttttta-ctccaacggtagttaactaccgctggatttatccggcggttgttaa |
8993 |
T |
|
| Q |
369 |
ctaccgtt |
376 |
Q |
| |
|
|||||||| |
|
|
| T |
8994 |
ctaccgtt |
9001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0272; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 410 - 463
Target Start/End: Original strand, 9022 - 9075
Alignment:
| Q |
410 |
aattgctccaacgatagttaactaccgtggagcatgtataattaattttttggg |
463 |
Q |
| |
|
|||||||||| || |||||||| ||||||||||||||||| |||||||| |||| |
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| T |
9022 |
aattgctccagcggtagttaacgaccgtggagcatgtatatttaattttctggg |
9075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 9e-16; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 269 - 388
Target Start/End: Complemental strand, 4997222 - 4997103
Alignment:
| Q |
269 |
ttgcttttttgacatagaaaattttataatgacacatgaaaatgacgtttttatctccagcggtaattaacaactgttggatttatctggcggttgttaa |
368 |
Q |
| |
|
||||||||||||||| |||| || ||| ||||||||| |||||||||||||| |||| |||||| ||||| | |||||||||| | || || ||||| |
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|
| T |
4997222 |
ttgcttttttgacattcaaaacttcatattgacacatggaaatgacgtttttacctccggcggtagttaactgccgttggatttaccctgcagtagttaa |
4997123 |
T |
|
| Q |
369 |
ctaccgttctaaatatacaa |
388 |
Q |
| |
|
||||||||| || ||||||| |
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|
| T |
4997122 |
ctaccgttccaagtatacaa |
4997103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 346
Target Start/End: Original strand, 47943261 - 47943334
Alignment:
| Q |
273 |
ttttttgacatagaaaattttataatgacacatgaaaatgacgtttttatctccagcggtaattaacaactgtt |
346 |
Q |
| |
|
|||||||||| ||| ||||| || ||||||| | |||||||||||||| ||| ||||| | |||||||||||| |
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|
| T |
47943261 |
ttttttgacaatgaatattttctattgacacaagtaaatgacgtttttacctcgagcggcagttaacaactgtt |
47943334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 346
Target Start/End: Original strand, 47948691 - 47948764
Alignment:
| Q |
273 |
ttttttgacatagaaaattttataatgacacatgaaaatgacgtttttatctccagcggtaattaacaactgtt |
346 |
Q |
| |
|
|||||||||| ||| ||||| || ||||||| | |||||||||||||| ||| ||||| | |||||||||||| |
|
|
| T |
47948691 |
ttttttgacaatgaatattttctattgacacaagtaaatgacgtttttacctcgagcggcagttaacaactgtt |
47948764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 270 - 387
Target Start/End: Complemental strand, 53688607 - 53688490
Alignment:
| Q |
270 |
tgcttttttgacatagaaaattttataatgacacatgaaaatgacgtttttatctccagcggtaattaacaactgttggatttatctggcggttgttaac |
369 |
Q |
| |
|
|||||||||||||| |||| || ||| |||||||| |||||| ||||||||| |||| ||| ||||| || |||||||||||| | |||| |||||| |
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|
| T |
53688607 |
tgcttttttgacatttaaaacttcatattgacacattgaaatgatgtttttatccccagtagtagttaactaccgttggatttatccgacggtagttaac |
53688508 |
T |
|
| Q |
370 |
taccgttctaaatataca |
387 |
Q |
| |
|
|||||||| || |||||| |
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|
| T |
53688507 |
taccgttccaagtataca |
53688490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 342
Target Start/End: Original strand, 11284246 - 11284319
Alignment:
| Q |
269 |
ttgcttttttgacatagaaaattttataatgacacatgaaaatgacgtttttatctccagcggtaattaacaac |
342 |
Q |
| |
|
|||||||| |||||||| ||| || || ||||| | | |||||||||||||||||||||||| | |||||||| |
|
|
| T |
11284246 |
ttgcttttctgacataggaaacttcctattgacataagtaaatgacgtttttatctccagcggcagttaacaac |
11284319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 339
Target Start/End: Original strand, 53687735 - 53687776
Alignment:
| Q |
298 |
tgacacatgaaaatgacgtttttatctccagcggtaattaac |
339 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||| ||||| |
|
|
| T |
53687735 |
tgacacataaaaatgacatttttatctccagcggtagttaac |
53687776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 321
Target Start/End: Complemental strand, 53896834 - 53896782
Alignment:
| Q |
269 |
ttgcttttttgacatagaaaattttataatgacacatgaaaatgacgttttta |
321 |
Q |
| |
|
|||||||| ||||||| ||| || ||||||||||||| |||||||||||||| |
|
|
| T |
53896834 |
ttgcttttctgacatacaaagcttcataatgacacatggaaatgacgttttta |
53896782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 269 - 370
Target Start/End: Original strand, 45243106 - 45243207
Alignment:
| Q |
269 |
ttgcttttttgacatagaaaattttataatgacacatgaaaatgacgtttttatctccagcggtaattaacaactgttggatttatctggcggttgttaa |
368 |
Q |
| |
|
||||||||||||||| ||||||| || ||||||||| |||||| |||||| ||||| | |||||||||||| | |||||||||| |||||| ||||| |
|
|
| T |
45243106 |
ttgcttttttgacattcaaaatttcttattgacacatgtaaatgatatttttacctccaacagtaattaacaaccgctggatttatccggcggtggttaa |
45243205 |
T |
|
| Q |
369 |
ct |
370 |
Q |
| |
|
|| |
|
|
| T |
45243206 |
ct |
45243207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 273 - 377
Target Start/End: Complemental strand, 22239304 - 22239200
Alignment:
| Q |
273 |
ttttttgacatagaaaattttataatgacacatgaaaatgacgtttttatctccagcggtaattaacaactgttggatttatctggcggttgttaactac |
372 |
Q |
| |
|
|||| |||||| ||||| | ||| ||||||||||||||||| |||||| | | ||| | | ||||| || |||| ||||||| |||||| ||||||||| |
|
|
| T |
22239304 |
ttttctgacattcaaaatgtcatattgacacatgaaaatgacatttttacccctagcagcagttaactaccgttgaatttatccggcggtggttaactac |
22239205 |
T |
|
| Q |
373 |
cgttc |
377 |
Q |
| |
|
||||| |
|
|
| T |
22239204 |
cgttc |
22239200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 345
Target Start/End: Original strand, 30191670 - 30191746
Alignment:
| Q |
269 |
ttgcttttttgacatagaaaattttataatgacacatgaaaatgacgtttttatctccagcggtaattaacaactgt |
345 |
Q |
| |
|
|||||||| |||||||||| | || || ||||||| | |||||||| ||||| | ||||||||| ||||||||||| |
|
|
| T |
30191670 |
ttgcttttctgacatagaatacttcctattgacacaagtaaatgacgcttttacccccagcggtagttaacaactgt |
30191746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 298 - 376
Target Start/End: Complemental strand, 4222819 - 4222742
Alignment:
| Q |
298 |
tgacacatgaaaatgacgtttttatctccagcggtaattaacaactgttggatttatctggcggttgttaactaccgtt |
376 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||| ||||| | || |||||||||||| ||| ||||||||||||| |
|
|
| T |
4222819 |
tgacacatgaaaatgacgtttttacc-ccagcggtagttaactgccgtgggatttatctggaggtagttaactaccgtt |
4222742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 272 - 374
Target Start/End: Original strand, 19802540 - 19802642
Alignment:
| Q |
272 |
cttttttgacatagaaaattttataatgacacatgaaaatgacgtttttatctccagcggtaattaacaactgttggatttatctggcggttgttaacta |
371 |
Q |
| |
|
|||||||||||| |||| | ||| |||||||||||||||| ||||||| |||| |||||| ||||| || |||||||| ||| ||||| |||||||| |
|
|
| T |
19802540 |
cttttttgacattcaaaacatcatattgacacatgaaaatgatgtttttacctccggcggtagttaactaccgttggattgatccggcggcagttaacta |
19802639 |
T |
|
| Q |
372 |
ccg |
374 |
Q |
| |
|
||| |
|
|
| T |
19802640 |
ccg |
19802642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0097 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0097
Description:
Target: scaffold0097; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 269 - 374
Target Start/End: Original strand, 44916 - 45021
Alignment:
| Q |
269 |
ttgcttttttgacatagaaaattttataatgacacatgaaaatgacgtttttatctccagcggtaattaacaactgttggatttatctggcggttgttaa |
368 |
Q |
| |
|
|||||||| || |||| |||| ||||||| |||||| | ||||||||||||| ||||| ||||| ||||| || | | |||||||||| |||| ||||| |
|
|
| T |
44916 |
ttgcttttctggcatacaaaactttataaagacacaggtaaatgacgtttttgcctccaacggtagttaactaccgctagatttatctgccggtagttaa |
45015 |
T |
|
| Q |
369 |
ctaccg |
374 |
Q |
| |
|
|||||| |
|
|
| T |
45016 |
ctaccg |
45021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 385
Target Start/End: Original strand, 22424795 - 22424887
Alignment:
| Q |
292 |
ttataatgacacatgaaaatgacgtttttatctccagcggtaattaacaactgttggatttatctggcggttgttaactaccgttctaaatata |
385 |
Q |
| |
|
||||| |||||||||||||| || |||||| ||||||||||| ||||| || | ||| |||||| |||| ||||||||| |||| ||||||| |
|
|
| T |
22424795 |
ttatattgacacatgaaaataacattttta-ctccagcggtagttaactaccgctgggtttatccaacggtagttaactacggttccaaatata |
22424887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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