View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14039_low_5 (Length: 547)
Name: NF14039_low_5
Description: NF14039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14039_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-178; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 16 - 529
Target Start/End: Complemental strand, 40170869 - 40170341
Alignment:
| Q |
16 |
aatatctcctcaaatatctgagcg--ataaaatgtaatcgaatgcatgtgtaaaacttttttacaccaataatgcatatcaattaaa-ctcattgtatac |
112 |
Q |
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|||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||| || || ||||||||||||||||||| |||||| ||||| |
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| T |
40170869 |
aatatctcctcaaatatctgagcgcgataaaatgtgactgaatgcatgtgtaaaacttttataggccgataatgcatatcaattaaaactcattatatac |
40170770 |
T |
|
| Q |
113 |
tttcccacttaaaaccaaacacttgtccattgttttgtattgttcaactttatttgcagaagttccacatgcatagcatatatggtgggtcctaatgatt |
212 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
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| T |
40170769 |
tttcccacttaaaaccaaacacttgttcattgttttgtattgttcaactttatttgcaaaagttccacatgcatagaatatatggtgggtcctaatgatt |
40170670 |
T |
|
| Q |
213 |
ttgataaaataatcctcaaaaaggtgaagacac-tatatgttaaatgaaaccatgcatgttgttatatcattctcgtgcttcatcaacacaatttcaaga |
311 |
Q |
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||||||||||||||||||||| |||||| |||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
40170669 |
ttgataaaataatcctcaaaa-ggtgaacacacatatatgttaaattaaaccatgcatgttattatatcattctcgtgcttcatcaacacaattccaaga |
40170571 |
T |
|
| Q |
312 |
tacactttcattattacgcaacactatcccgtcatgattcgaacaatctttaattattcataagcaaaatcactaagattgttcagtattactaaacaga |
411 |
Q |
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||||||| ||||||||||||||||||||| |||| |||| ||||||||||||||| ||||||||||| |||||||||||| ||||| ||| |||| ||| |
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| T |
40170570 |
tacacttccattattacgcaacactatccaatcataattcaaacaatctttaattagtcataagcaaattcactaagattgctcagtgttaataaaaaga |
40170471 |
T |
|
| Q |
412 |
accaaactaatcaaattcagcgtt---------ccaatcacaacacaaactcaaattgagtgatagtagtaa---attataatagtatcattaccatggg |
499 |
Q |
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|||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||| |
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| T |
40170470 |
accaaactaatcaaattcagcgttgccataacactaatcacaacacaaactcaaattgagtaatagtagtaaatgattataacagtatcattaccatggg |
40170371 |
T |
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| Q |
500 |
cttggatggaacagcaagggaagttttgac |
529 |
Q |
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||| ||||| |||||||||| |||||||| |
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| T |
40170370 |
cttatatggagcagcaagggaggttttgac |
40170341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 36480073 - 36480121
Alignment:
| Q |
55 |
atgcatgtgtaaaacttttttacaccaataatgcatatcaattaaactc |
103 |
Q |
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||||||||||||||||| |||||||| | |||||||||||||||||||| |
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| T |
36480073 |
atgcatgtgtaaaacttgtttacaccgacaatgcatatcaattaaactc |
36480121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 55 - 104
Target Start/End: Original strand, 8279576 - 8279625
Alignment:
| Q |
55 |
atgcatgtgtaaaacttttttacaccaataatgcatatcaattaaactca |
104 |
Q |
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| T |
8279576 |
atgcatgtgtaaaacttttttacaccaacagtgtatatgaattaaactca |
8279625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 108
Target Start/End: Original strand, 20996368 - 20996421
Alignment:
| Q |
55 |
atgcatgtgtaaaacttttttacaccaataatgcatatcaattaaactcattgt |
108 |
Q |
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|||| ||| |||||||||||||||| | |||||||||||||||||||||||| |
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| T |
20996368 |
atgcttgtataaaacttttttacacttaatatgcatatcaattaaactcattgt |
20996421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 103
Target Start/End: Complemental strand, 18637491 - 18637438
Alignment:
| Q |
50 |
atcgaatgcatgtgtaaaacttttttacaccaataatgcatatcaattaaactc |
103 |
Q |
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|||| |||||| |||||||||| ||||||| | |||||||||||||||||||| |
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| T |
18637491 |
atcgtatgcatatgtaaaacttctttacactgacaatgcatatcaattaaactc |
18637438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 28479165 - 28479117
Alignment:
| Q |
55 |
atgcatgtgtaaaacttttttacaccaataatgcatatcaattaaactc |
103 |
Q |
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|||||||||||||||||||||||||| | || ||||||||||||||| |
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| T |
28479165 |
atgcatgtgtaaaacttttttacaccgacggtgaatatcaattaaactc |
28479117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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