View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14039_low_6 (Length: 542)
Name: NF14039_low_6
Description: NF14039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14039_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 4 - 382
Target Start/End: Original strand, 20952885 - 20953262
Alignment:
| Q |
4 |
agttttatagaaacaaataaataaacctttcaacagattaaataat---gtgagtaactgagtactgtattattatataactccttnnnnnnnntggcaa |
100 |
Q |
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| T |
20952885 |
agttttatagaaacaaataaataaacctttcaacagattaaataataatgtgagtaactgagtactgtattattatataactccttaaaaaaa-tggcaa |
20952983 |
T |
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| Q |
101 |
aatgcaattctgcttatgtagtcataaatttcactttcacatcatgctggttagctttgatagtcttattttattttgctgattgatgtttcagtgcata |
200 |
Q |
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| T |
20952984 |
aatgcaattctgcttatgtagtcataaatttcactttcacatcatgctg-ttagctttgatagtcttattttattttgctgattgatgtttcagtgcata |
20953082 |
T |
|
| Q |
201 |
attgacttcacagattttgtagttaattaaaatcgttgtcatgcatgtcctggactgcttttatggtcactttcagatcattaacacataatacttcccc |
300 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20953083 |
attgacttcacagattttgtagttaattaaaatcattgtcatg----tccaggactgcttttatggtcactttcagatcattaacacataatacttcccc |
20953178 |
T |
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| Q |
301 |
ggatatacaagtgatggataatatggtctctaatatttttt--gacgaggattttgttgttgacaactatgaagactaatcctt |
382 |
Q |
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|||||||||||||||||| |||| |||||||||| |||||| | ||| | ||||| | | |||||||| ||||||||||||| |
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| T |
20953179 |
ggatatacaagtgatggacaataaggtctctaatcttttttttggtgagaactttgtcgatcacaactataaagactaatcctt |
20953262 |
T |
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