View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1403_high_12 (Length: 260)
Name: NF1403_high_12
Description: NF1403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1403_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 30 - 132
Target Start/End: Complemental strand, 45706871 - 45706769
Alignment:
| Q |
30 |
ggtggtacagcaatccaaacgttgatacttatcatagtaacagcacgatgtgattgggaaaatgaggtatatacacttcaacataaaactatacacataa |
129 |
Q |
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| T |
45706871 |
ggtggtacagcaatccaaacgttgatacttatcatagtaacagcacgatgtgattgggaaaatgaggtatatacacttcaacataaaactatacacataa |
45706772 |
T |
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| Q |
130 |
ctc |
132 |
Q |
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| T |
45706771 |
ctc |
45706769 |
T |
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Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 197 - 260
Target Start/End: Complemental strand, 45706704 - 45706641
Alignment:
| Q |
197 |
gtacgtgcaggcaaagaaggctaggtcacgtgtaagcaagtggtctgtcacaaaacctgatgac |
260 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
45706704 |
gtacgtgcaggcaaagaaggctaggtcaagtgtaagcaagtggtctgtcacaaaacctgatgac |
45706641 |
T |
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