View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1403_high_4 (Length: 477)
Name: NF1403_high_4
Description: NF1403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1403_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 75 - 472
Target Start/End: Original strand, 28666619 - 28667016
Alignment:
| Q |
75 |
tagaatgaaaaaggaatgatgtgacaaaaactgaaaaattacctctttgtgatcaacaggaacagaaggatataatctgagagtttcagataaacaagca |
174 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28666619 |
tagaatgaaaaaggaatgatgtgacaaaaactgaaaaattacctccttgtgatcaacaggaacagaaggatataatctgagagtttcagataaacaagca |
28666718 |
T |
|
| Q |
175 |
tgcaaatagtccatcttttttatctcttcaggcctaaatatcaaagaattttcaaattcttccttctttatatcatttctctgactcaccaccttgcata |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28666719 |
tgcaaatagtccatcttttttatctcttcaggcctaaatatcaaagaattttcaaattcttccttctttatatcatttctctgactcaccaccttgcata |
28666818 |
T |
|
| Q |
275 |
tctcttctaatatcttctcctccacttcatgattctgatcaagtaaccnnnnnnnccaactcaaagccacagaagaagtgtctctcccagctagtataaa |
374 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28666819 |
tctcttctaatatcttctcctccacttcatgattctgatcaagtaaccaaaaaaaccaactcaaagccacagaagaagtgtctctcccagctagtataaa |
28666918 |
T |
|
| Q |
375 |
attcacacatatatccctcagaaacttatctgaataagcacttccattctcatccttcatcttcataaaaacagttaacaaatctgacctttgcttct |
472 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
28666919 |
attcacacatatatccctcagaaacttatctgaataagcacttccattctcatccttcatcttcataaaaacagttaacaaatctgacctttgtttct |
28667016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 108; Significance: 5e-54; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 112 - 461
Target Start/End: Complemental strand, 13887897 - 13887542
Alignment:
| Q |
112 |
attacctctttgtgatcaacaggaacagaaggatataatctgagagtttcagataaacaagcatgcaaatagtccatcttttttatctcttcaggcctaa |
211 |
Q |
| |
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||||||||||| ||||| | ||||||||||||||| ||||| |||||||| || | | |||||||||||| ||||||| || ||||| ||||| | | |
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| T |
13887897 |
attacctctttatgatccataggaacagaaggatacaatctaagagtttctgaaagagcagcatgcaaataacccatcttcttaatctcctcaggtttga |
13887798 |
T |
|
| Q |
212 |
atatcaaagaattttcaaattcttccttctttatatcattt------ctctgactcaccaccttgcatatctcttctaatatcttctcctccacttcatg |
305 |
Q |
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|| | ||||||| | ||| ||||||| || |||| | | || |||||||| ||| |||| |||||||||||||| ||||||||||||||||| |
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| T |
13887797 |
atcttaaagaatcattaaacacttccttattaatattaatatcctccctttgactcacaaccctgcaaatctcttctaatattttctcctccacttcatg |
13887698 |
T |
|
| Q |
306 |
attctgatcaagtaaccnnnnnnnccaactcaaagccacagaagaagtgtctctcccagctagtataaaattcacacatatatccctcagaaacttatct |
405 |
Q |
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| T |
13887697 |
attctgattaagtaaccagaaaaaccagcttaaagcaactgaagaagtgtctctcccagctaatataaaacttacacatatatccctcaagaacttatct |
13887598 |
T |
|
| Q |
406 |
gaataagcacttccattctcatccttcatcttcataaaaacagttaacaaatctga |
461 |
Q |
| |
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|||||||| ||||||||||||| || | ||||||||| ||||||||||||||||| |
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|
| T |
13887597 |
gaataagcctttccattctcatctttaagcttcataaacacagttaacaaatctga |
13887542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 130 - 458
Target Start/End: Original strand, 13897337 - 13897665
Alignment:
| Q |
130 |
acaggaacagaaggatataatctgagagtttcagataaacaagcatgcaaatagtccatcttttttatctcttcaggcctaaatatcaaagaattttcaa |
229 |
Q |
| |
|
||||||||||||||||||||||| |||| ||| || | | ||||||||||| |||||||| || ||||| |||||| | ||| ||||||||| | || |
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| T |
13897337 |
acaggaacagaaggatataatctaagagcttctgaaagagctgcatgcaaataatccatcttcttaatctcctcaggcttgaatctcaaagaatcattaa |
13897436 |
T |
|
| Q |
230 |
attcttccttctttatatcatttctctgactcaccaccttgcatatctcttctaatatcttctcctccacttcatgattctgatcaagtaaccnnnnnnn |
329 |
Q |
| |
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| ||||||| || ||||| | || |||| ||| ||| |||| |||||||||||||| |||||||| ||||||||||||||||||| |||| |
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| T |
13897437 |
acacttccttattaatatcctccctttgacacacaaccctgcaaatctcttctaatattttctcctcaacttcatgattctgatcaaccaaccagaaaaa |
13897536 |
T |
|
| Q |
330 |
ccaactcaaagccacagaagaagtgtctctcccagctagtataaaattcacacatatatccctcagaaacttatctgaataagcacttccattctcatcc |
429 |
Q |
| |
|
||| || ||||| || |||||||||||||||||||||| ||| ||||| ||||| |||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
13897537 |
ccagcttaaagcaactgaagaagtgtctctcccagctaatatgaaatttacacaaatatccctcaaaaacttatctgaataagactttccattctcatcc |
13897636 |
T |
|
| Q |
430 |
ttcatcttcataaaaacagttaacaaatc |
458 |
Q |
| |
|
|| | | |||| || |||||||||||||| |
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| T |
13897637 |
ttaagcctcatgaacacagttaacaaatc |
13897665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 345 - 457
Target Start/End: Original strand, 7295586 - 7295696
Alignment:
| Q |
345 |
agaagaagtgtctctcccagctagtataaaattcacacatatatccctcagaaacttatctgaataagcacttccattctcatccttcatcttcataaaa |
444 |
Q |
| |
|
|||||||||||||||||| |||| ||| ||||||| ||||||||||||| | |||||||||| || | | |||||||||||||| | | | |||| || |
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| T |
7295586 |
agaagaagtgtctctcccggctaatatgaaattcaaacatatatccctc--acacttatctgagtatgaaattccattctcatccgtaagcctcattaac |
7295683 |
T |
|
| Q |
445 |
acagttaacaaat |
457 |
Q |
| |
|
||||||||||||| |
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| T |
7295684 |
acagttaacaaat |
7295696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 261 - 458
Target Start/End: Original strand, 1034525 - 1034722
Alignment:
| Q |
261 |
caccaccttgcatatctcttctaatatcttctcctccacttcatgattctgatcaagtaaccnnnnnnnccaactcaaagccacagaagaagtgtctctc |
360 |
Q |
| |
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||||||| |||| || ||||||||||| |||||||| ||||||||||||||||||| |||| ||| |||||||| || ||||||||||||||| |
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| T |
1034525 |
caccaccctgcaaatttcttctaatattttctcctcaacttcatgattctgatcaaccaaccagaaaaaccagctcaaagcaactgaagaagtgtctctc |
1034624 |
T |
|
| Q |
361 |
ccagctagtataaaattcacacatatatccctcagaaacttatctgaataagcacttccattctcatccttcatcttcataaaaacagttaacaaatc |
458 |
Q |
| |
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||||||| ||||||||| ||||| |||||||||| ||||||||||||||||| |||||||||||||||| | | ||||||| |||||||||||||| |
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| T |
1034625 |
ccagctaatataaaatttacacaaatatccctcaaaaacttatctgaataagactttccattctcatccttaagcctcataaacacagttaacaaatc |
1034722 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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