View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1403_high_5 (Length: 474)
Name: NF1403_high_5
Description: NF1403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1403_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 34 - 464
Target Start/End: Original strand, 39993607 - 39994037
Alignment:
| Q |
34 |
catatataaatcaaagtagtattagttagttaagaagttagctaagtagttaaattacttgttatgcaagtaattgtttgtgttgattgtattgagcctt |
133 |
Q |
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| T |
39993607 |
catatataaatcaaagtagtattagttagttaagaagttaactaagtagttaaattacttgttatgcaagtaattgtttgtgttgattgtattgagcctt |
39993706 |
T |
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| Q |
134 |
gttgagtggaatgagcctaaatccatattgaatgagcaatgtataaacagaggttgcacccatgaataaagtagttttattttgcatttcactttctctc |
233 |
Q |
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| T |
39993707 |
gttgagtggaatgagcctaaatccatatagaatgagcaatgtataaacagaggttgtacccatgaataaagtagttttattttgcatttcactttctctc |
39993806 |
T |
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| Q |
234 |
taagccattttccctatctgaatgtgtgttaccataggtcagagtccaatagtgaggagtaaggtatatttataaacaaaataggaacttaaatatcaaa |
333 |
Q |
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| T |
39993807 |
taagccattttccctatctgaatgtgtgttaccataggtcaaagtccaatagtgaggagtaaggtatagtaataaacaaaataggaacttaaatatcaaa |
39993906 |
T |
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| Q |
334 |
actaacacatagaacaaaggatcaattactaataagaagtacaaaatcaaataatgtgatgagtcattttagagtatgtttgttaccatatatacgatta |
433 |
Q |
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| T |
39993907 |
actaacacatagaacaaaggatcgattactaataagaagtacaaaatcaaataatgtgatgagtcattttagagtatgtttgttaccatatatacgatta |
39994006 |
T |
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| Q |
434 |
gagtatattttagtgtgatggttgatctctg |
464 |
Q |
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| T |
39994007 |
gagtatattttcgtgtgatggttgatctctg |
39994037 |
T |
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