View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1403_low_1 (Length: 836)
Name: NF1403_low_1
Description: NF1403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1403_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 93 - 458
Target Start/End: Complemental strand, 41661946 - 41661576
Alignment:
| Q |
93 |
ttaagtccaacaccaaacaattttatagctgattaaattcttctttaaaagctacaatttgatttgaaattgtagaaccgactgtctcatcattaaaata |
192 |
Q |
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| T |
41661946 |
ttaagtccaacaccaaacaattttatacctgattaaattcttctttaaaagctacaatttgatttgaaattctagaaccgactgtctcatcattaaaata |
41661847 |
T |
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| Q |
193 |
aaactcactttaaaagcaaattataaatttttccctatttttaataccattgtcatcacatattttacatcatgaaatatatcctacctctatgtcggtt |
292 |
Q |
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| T |
41661846 |
aaactcactttaaaagcaaagtataaacttttccctatttttaataccattgtcatcacatattttacatcaagaaatatatcttacctctatgtcggtt |
41661747 |
T |
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| Q |
293 |
tattttgttaagaatcaccctatatcatcatcacataatttacatcatgaaatatattcttactccacgcttcattgacaatgaatataactatctaaaa |
392 |
Q |
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| T |
41661746 |
tattttgttaagaatcaccctatatggtcatcacataatttacatcatgaaatatattcttactccacgcttcattgacaatgaatataactatctaaaa |
41661647 |
T |
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| Q |
393 |
agaactactagctttagttt-----agttcaaaatcttaacggcgaataatattgtgtgaaaagttcaatt |
458 |
Q |
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| T |
41661646 |
agaactactagctttagtttagtttagttcaaaatcttaacggtgaataatattgtgtgaaaagttcaatt |
41661576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 557 - 808
Target Start/End: Complemental strand, 41661483 - 41661231
Alignment:
| Q |
557 |
cgactcatactaggacaaaacacatggct-tattttctagactaatattttaacttgtgggatgtttgcttgcatatgattgaacatgttttaatctttg |
655 |
Q |
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| T |
41661483 |
cgactcatactagggcaaaacacatggctatattttgtagactaatattttaacttgtgggatgtttgcttgcatatgattgaacatgttttaatctttg |
41661384 |
T |
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| Q |
656 |
actgcttgatttcttagcttgttgtttctagaaactcatttttgtgtacttcatgcttactaatttgtagattgacaattgtgnnnnnnnnnnnnnnnnn |
755 |
Q |
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| T |
41661383 |
actgcttgatttcttagcttgttgtctctggaaactcatttttgtgtacttcatgcttactaatttgtacattgacaattgtgtttttttttttcttttt |
41661284 |
T |
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| Q |
756 |
gaagttttaccattcttgttttaccctatatctcatccgggtacgtatacaat |
808 |
Q |
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| T |
41661283 |
gaagttttaccattcttgttttaccctatatctcaccaggatacgtgtacaat |
41661231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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