View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1403_low_10 (Length: 368)
Name: NF1403_low_10
Description: NF1403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1403_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-168; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 28 - 355
Target Start/End: Complemental strand, 15688867 - 15688540
Alignment:
| Q |
28 |
caaagacatcactgtacaatatcccaaaaagccaaagacaatttctcatctgttgagttgttgccaaagaaagaaactcaaacatggtgaacacaaacct |
127 |
Q |
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| T |
15688867 |
caaagacatcactgtacaatatcccaaaaagccaaagacaatatctcctctgttgagttgttgtcaaagaaagaaactcaaacatggtgaacacaaacct |
15688768 |
T |
|
| Q |
128 |
agaagaaatcaaacaagaccatgaacatgtttatgatagacacaaagagttaaagcttcttgatgaatcaaaagaaggtgtaaaaggacttgtagatgct |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
15688767 |
agaagaaatcaaacaagaccatgaacatgtttatgatagacagaaagagttaaagctgcttgatgaatcaaaagaaggtgtaaaaggacttgtagatgct |
15688668 |
T |
|
| Q |
228 |
ggtttgaccaaagtcccaaagatttttattcatgataagattcatgaacataacaacaaacaaaccagttcaaccaatcttagtattccaatcatagatt |
327 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15688667 |
ggtttgaccaaagtcccaaagattttcattcatgataagattcatgaacataacaacaaacaaaccagttcaaccaatcttagtattccaatcatagatt |
15688568 |
T |
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| Q |
328 |
ttggacctttatttaccaacacaggttc |
355 |
Q |
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||||||||||||||||||||||| |||| |
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| T |
15688567 |
ttggacctttatttaccaacacaagttc |
15688540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 31 - 345
Target Start/End: Complemental strand, 15684570 - 15684254
Alignment:
| Q |
31 |
agacatcactgtacaatatcccaaaaagccaaa-gacaatt-tctcatctgttgagttgttgccaaagaaagaaactcaaacatggtgaacacaaaccta |
128 |
Q |
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|||||||| |||||||| ||||||||| |||| ||||| | |||||||||||| |||||| | ||||||||||||||||||||| ||||||||| ||| |
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| T |
15684570 |
agacatcattgtacaatttcccaaaaaaacaaaagacaaatatctcatctgttgttttgttgtccaagaaagaaactcaaacatggggaacacaaatcta |
15684471 |
T |
|
| Q |
129 |
gaagaaatcaaacaagaccatgaacatgtttatgatagacacaaagagttaaagcttcttgatgaatcaaaagaaggtgtaaaaggacttgtagatgctg |
228 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
15684470 |
gaagaaatcaaacaagaccgtgaacatgtttatgatagacacaaagagttaatgcttcttgatgaatcaaaagaaggtgtaaaaggacttgttgatgctg |
15684371 |
T |
|
| Q |
229 |
gtttgaccaaagtcccaaagatttttattcatgataagattcatgaacataacaacaaacaaaccagttcaaccaatcttagtattccaatcatagattt |
328 |
Q |
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||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
15684370 |
gtttgaccaaattcccaaagattttcattcatgataaggttcatgaacataacaacaaacaaaccagttcaaccaatcttagtattccaatcatagactt |
15684271 |
T |
|
| Q |
329 |
tggacctttatttacca |
345 |
Q |
| |
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||||||||||||||||| |
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| T |
15684270 |
tggacctttatttacca |
15684254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 110 - 355
Target Start/End: Complemental strand, 15682445 - 15682200
Alignment:
| Q |
110 |
catggtgaacacaaacctagaagaaatcaaacaagaccatgaacatgtttatgatagacacaaagagttaaagcttcttgatgaatcaaaagaaggtgta |
209 |
Q |
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||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
15682445 |
catggtgaacacaaatctagaagaaatcaaacaagaacatgaacatgtttatgatagacagaaagagttaaagcttcttgatgaatcaaaagaaggtgta |
15682346 |
T |
|
| Q |
210 |
aaaggacttgtagatgctggtttgaccaaagtcccaaagatttttattcatgataagattcatgaacataacaacaaacaaaccagttcaaccaatctta |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15682345 |
aaaggacttgtagatgctggtttgaccaaagtcccaaagattttcattcatgataagattcatgaacataacaacaaacaaaccagttcaaccaatctta |
15682246 |
T |
|
| Q |
310 |
gtattccaatcatagattttggacctttatttaccaacacaggttc |
355 |
Q |
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|||||||||||||||||||||| |||||||||||||||||| |||| |
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|
| T |
15682245 |
gtattccaatcatagattttggtcctttatttaccaacacaagttc |
15682200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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