View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1403_low_12 (Length: 328)
Name: NF1403_low_12
Description: NF1403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1403_low_12 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 98 - 328
Target Start/End: Original strand, 35212653 - 35212883
Alignment:
| Q |
98 |
aaatgtttgtttagtagagtaaaattagaaggcagaggaagttcatacataaggggtcatctttggccatggtccttcatcaaaagcctttctagctgca |
197 |
Q |
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| T |
35212653 |
aaatgtttgtttagtagagtaaaattagaaggcagaggaagttcatacataaggggtcatctttggccatggtccttcatcaaaagcctttctagctgca |
35212752 |
T |
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| Q |
198 |
gatactgcacgattgatatcttcttgatcaccttcagcaacatgagcaatcacttccccagttcttgggtcataagcaggaaaagtttttcctattcacc |
297 |
Q |
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| T |
35212753 |
gatactgcacgattgatatcttcttgatcaccttcagcaacatgagcaatcacttccccagttcttgggtcataagcaggaaaagtttttcctattcacc |
35212852 |
T |
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| Q |
298 |
aataataaattgtcacaactacactccacta |
328 |
Q |
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| T |
35212853 |
aataataaattgtcacaactacactccacta |
35212883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 191 - 256
Target Start/End: Complemental strand, 39294074 - 39294009
Alignment:
| Q |
191 |
agctgcagatactgcacgattgatatcttcttgatcaccttcagcaacatgagcaatcacttcccc |
256 |
Q |
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| T |
39294074 |
agctgctgaaactgcacggttaatatcttcagcatcaccttcagcaacgtgagcaatcacttcccc |
39294009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 162 - 256
Target Start/End: Original strand, 44000178 - 44000272
Alignment:
| Q |
162 |
ggccatggtccttcatcaaaagcctttctagctgcagatactgcacgattgatatcttcttgatcaccttcagcaacatgagcaatcacttcccc |
256 |
Q |
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| T |
44000178 |
ggccaaggtccattatcaaaggcctcacgagctgctgaaactgcacggttaatatcttcagcatcaccttcagcaacatgagcaatcacttcccc |
44000272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 191 - 256
Target Start/End: Original strand, 8357652 - 8357717
Alignment:
| Q |
191 |
agctgcagatactgcacgattgatatcttcttgatcaccttcagcaacatgagcaatcacttcccc |
256 |
Q |
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|||||| || |||||||| || |||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
8357652 |
agctgctgaaactgcacggttaatatcttcagcatcaccttcagcaacgtgagcaatcacttcccc |
8357717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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