View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1403_low_13 (Length: 325)
Name: NF1403_low_13
Description: NF1403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1403_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 38 - 235
Target Start/End: Complemental strand, 42536157 - 42535964
Alignment:
| Q |
38 |
caacaatcacaagaaaaataatgcttacaatgaagcctgagaagaaacaataaaacctattccttttttatcatcagttggttggagttggaccagacat |
137 |
Q |
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| T |
42536157 |
caacaatcacaagacaaataatgcttacaatgaagcctgagaagaaacaataaaacctattccttttttatcattagttggttggagttggaccagacat |
42536058 |
T |
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| Q |
138 |
gaacatgaccatgtctgttacccgtataaatcgtgttcctggcggtcttcattataatagagggtggttataccctccaaagcctctgtaactgacat |
235 |
Q |
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| T |
42536057 |
gaacatgaccatgtctgttacccgtataaatcgcgttc----cggtcttcatcataatagagggtggttataccctccaaagcctctgtaactgacat |
42535964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 39 - 225
Target Start/End: Complemental strand, 42530454 - 42530264
Alignment:
| Q |
39 |
aacaatcacaagaaaaataatgcttacaatgaagcctgagaagaaacaataaaacctattccttttttatcatcagttggttggagttggaccagacatg |
138 |
Q |
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|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42530454 |
aacaatcacatgacaaataatgcttacaatgaagcctgagaagaaacaataaaacctattccttttttatcatcagttggttggagttggaccagacatg |
42530355 |
T |
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| Q |
139 |
aacatgaccatgtctgttacccgtataaatcgtgttcctggcggtcttca--------ttataatagagggtggttataccctccaaagcctctg |
225 |
Q |
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|||| ||||||||||||||||||||||||||| |||| ||||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
42530354 |
aacaagaccatgtctgttacccgtataaatcgcgttc----cggtcttcatcataaattcataatagagggtggttataccctccaaagcctctg |
42530264 |
T |
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